BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0687300 Os01g0687300|AK122113
(764 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0687300 Conserved hypothetical protein 1540 0.0
Os05g0552100 Conserved hypothetical protein 424 e-118
>Os01g0687300 Conserved hypothetical protein
Length = 764
Score = 1540 bits (3987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/764 (96%), Positives = 739/764 (96%)
Query: 1 MPESSTNRFCKKVDLEVLPSRSDVGESSYHKHSLWMAHWARSSISPEPQNGQSCSPLKEI 60
MPESSTNRFCKKVDLEVLPSRSDVGESSYHKHSLWMAHWARSSISPEPQNGQSCSPLKEI
Sbjct: 1 MPESSTNRFCKKVDLEVLPSRSDVGESSYHKHSLWMAHWARSSISPEPQNGQSCSPLKEI 60
Query: 61 DDVGYSKDCGALPFELMKARVAERLMVGVSHGGVSAGNTRQFSTNMRGVARDVCQEVQCK 120
DDVGYSKDCGALPFELMKARVAERLMVGVSHGGVSAGNTRQFSTNMRGVARDVCQEVQCK
Sbjct: 61 DDVGYSKDCGALPFELMKARVAERLMVGVSHGGVSAGNTRQFSTNMRGVARDVCQEVQCK 120
Query: 121 NVDQMGSSFESSVMQKNVNLYAAKTVVSERYSVHKISDILVDSRKLCGTENLSSEWNHFP 180
NVDQMGSSFESSVMQKNVNLYAAKTVVSERYSVHKISDILVDSRKLCGTENLSSEWNHFP
Sbjct: 121 NVDQMGSSFESSVMQKNVNLYAAKTVVSERYSVHKISDILVDSRKLCGTENLSSEWNHFP 180
Query: 181 MFEINRKIDSILNPRRSALVTSSEKIFVPQKSVKINMSTSNVMSFSSKEYQLHTHQVTDE 240
MFEINRKIDSILNPRRSALVTSSEKIFVPQKSVKINMSTSNVMSFSSKEYQLHTHQVTDE
Sbjct: 181 MFEINRKIDSILNPRRSALVTSSEKIFVPQKSVKINMSTSNVMSFSSKEYQLHTHQVTDE 240
Query: 241 NRQCKSARGMLSHLDNYTGLNSDHAGKKLKGHLSIEEPXXXXXXXXXXXXXLADEHHARH 300
NRQCKSARGMLSHLDNYTGLNSDHAGKKLKGHLSIEEP LADEHHARH
Sbjct: 241 NRQCKSARGMLSHLDNYTGLNSDHAGKKLKGHLSIEEPCSCSKDDTDSSCSLADEHHARH 300
Query: 301 YIPNSKKSPHRSCKNSSVYSASKMENQFVEGSLLEHKSEVYGACKKKQHLEGVAFHESAL 360
YIPNSKKSPHRSCKNSSVYSASKMENQFVEGSLLEHKSEVYGACKKKQHLEGVAFHESAL
Sbjct: 301 YIPNSKKSPHRSCKNSSVYSASKMENQFVEGSLLEHKSEVYGACKKKQHLEGVAFHESAL 360
Query: 361 HREYQIKSVKTTAITNEGDMDTNGHHVDFGNLLQSDQQYLNKHTEDSAVNLTESCKTPDA 420
HREYQIKSVKTTAITNEGDMDTNGHHVDFGNLLQSDQQYLNKHTEDSAVNLTESCKTPDA
Sbjct: 361 HREYQIKSVKTTAITNEGDMDTNGHHVDFGNLLQSDQQYLNKHTEDSAVNLTESCKTPDA 420
Query: 421 IDSAMILKSKDESLAQEKRTNNKLIDNKRKGPCLFEMFTQPTKSNVKCSIDRTSSGKSCG 480
IDSAMILKSKDESLAQEKRTNNKLIDNKRKGPCLFEMFTQPTKSNVKCSIDRTSSGKSCG
Sbjct: 421 IDSAMILKSKDESLAQEKRTNNKLIDNKRKGPCLFEMFTQPTKSNVKCSIDRTSSGKSCG 480
Query: 481 NMTSGLLGAQKQFSTKTDTFYSEAHHASKSTAGFASASMQKDLGYPSSAKTEQLVTXXXX 540
NMTSGLLGAQKQFSTKTDTFYSEAHHASKSTAGFASASMQKDLGYPSSAKTEQLVT
Sbjct: 481 NMTSGLLGAQKQFSTKTDTFYSEAHHASKSTAGFASASMQKDLGYPSSAKTEQLVTSSVK 540
Query: 541 XXXXXXXXNEAVNTSAEHRDFYPKATCANNQEWSMSKTSSMNLDLVLFQISRLKNPIPNA 600
NEAVNTSAEHRDFYPKATCANNQEWSMSKTSSMNLDLVLFQISRLKNPIPNA
Sbjct: 541 GVSSGSKGNEAVNTSAEHRDFYPKATCANNQEWSMSKTSSMNLDLVLFQISRLKNPIPNA 600
Query: 601 LNESPACPDPSEKWLKRLQHDTSDSHVPCSKKPKVGDGPLAGGTCTVFGQVFDCDSDSTG 660
LNESPACPDPSEKWLKRLQHDTSDSHVPCSKKPKVGDGPLAGGTCTVFGQVFDCDSDSTG
Sbjct: 601 LNESPACPDPSEKWLKRLQHDTSDSHVPCSKKPKVGDGPLAGGTCTVFGQVFDCDSDSTG 660
Query: 661 MINHVKNKLICKGLTDQQSQEGSPMSAKSLNRWIGRWCRGGTPVFHGTSNLERQEAKSGM 720
MINHVKNKLICKGLTDQQSQEGSPMSAKSLNRWIGRWCRGGTPVFHGTSNLERQEAKSGM
Sbjct: 661 MINHVKNKLICKGLTDQQSQEGSPMSAKSLNRWIGRWCRGGTPVFHGTSNLERQEAKSGM 720
Query: 721 PSDDLEGQFPSIAAMAMMGRVMNKLRPCELQKRGPSVVWRTEGL 764
PSDDLEGQFPSIAAMAMMGRVMNKLRPCELQKRGPSVVWRTEGL
Sbjct: 721 PSDDLEGQFPSIAAMAMMGRVMNKLRPCELQKRGPSVVWRTEGL 764
>Os05g0552100 Conserved hypothetical protein
Length = 712
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 285/763 (37%), Positives = 413/763 (54%), Gaps = 75/763 (9%)
Query: 22 SDVGESSYHKHSLWMAHWARSSISPEPQNGQSC-SPLKEIDDVGYSKDCGALPFELMKAR 80
SD GE S KHS WM+HW + S S EPQ G+S SP D+ + G FE+MK+R
Sbjct: 2 SDPGEPS--KHSQWMSHWTKGSSSAEPQVGRSNDSPEDAKYDI-CEDNSGPSNFEIMKSR 58
Query: 81 VAERLMVGVSHGGVSAGNTRQFSTNMRGVARDVCQEVQCKNVDQMGSSFESSVMQKNVNL 140
+ ERLMVG+S S + ++ ++NM+ V +D + +DQ + SVMQK+V L
Sbjct: 59 LFERLMVGISQERASLEHGQKLNSNMKVVVKDARRHAVQNQIDQGDGPIQKSVMQKDV-L 117
Query: 141 YAAKTVVSERYSVHKISDILVDSRKLCGTENLSSEWNHFPMFEINRKIDSILNP-RRSAL 199
YA K VVS+ S+ K+S++ VD +KL G+++LSSEWNHFPM INRKIDSILNP R+SA
Sbjct: 118 YA-KAVVSKSLSIQKLSELSVDCQKLAGSDDLSSEWNHFPMLAINRKIDSILNPKRKSAK 176
Query: 200 VTSSEKIFVPQKSVKINMSTSNVMSFSSKEYQLHTHQVTDENR-QCKSARGMLSHLDNYT 258
T +FVP++++K+NM+T+N+M+FSS+EY+LH+H+ TDE CK A G++S L+++
Sbjct: 177 STGPNDVFVPKQTLKLNMTTANLMAFSSQEYELHSHRTTDETMDHCKHAGGIVSRLEDHA 236
Query: 259 GLNSDHAGKKLKGHLSIEEPXXXXXXXXXXXXXLADEHHARHYIPNSKKSPHRSCKNSSV 318
G+ + A +KLKG L L DE H YI +S + P + +
Sbjct: 237 GVMLNPAEQKLKGQLLPATSCSCSKDDSNSSDSLLDEQHTSRYIADSDQEPTCRSREKRL 296
Query: 319 YSASKMENQFVEGSLLEHKSEVYGACKKKQHLEGVAFHESALHREYQIKSVKTTAITNEG 378
S+ + GS +++ K + GV F S +E++ + + N
Sbjct: 297 KSSENNDTNCKIGSCSQNQKSRAPGHHKHKGSAGVMFRTSVPGKEFEAAEINCSDKIN-- 354
Query: 379 DMDTNGHHVDFGNLLQSDQQYLNKHTEDSAVNLTESCKTPDAIDSAMILKSKDESLAQEK 438
Q++LN SA N+T SC PD + + E++ Q
Sbjct: 355 ------------------QRHLNTQRIVSAANVTGSC-IPDPAADISTVNGRGEAVTQPS 395
Query: 439 RTNNKLIDNKRKGPCLFEMFTQPTKSNVKCSIDRTSSGKSCG--------NMTSGLLGAQ 490
+ KRK P LFEM T P+K+ D SG S N+ S L GA
Sbjct: 396 SISGD--STKRKAPYLFEMLTIPSKAQNMNPEDSLPSGNSTAFGVHMYGTNIGSHLFGAN 453
Query: 491 KQFSTKTDTFYSEAHHASKSTAGFASASMQKDLGYPSSAKTEQLVTXXXXXXXXXXXXNE 550
+ ST+T+ ++ H SKS+AG AS QK AK+EQL T
Sbjct: 454 NKSSTETEILSGDSQHVSKSSAGIASLLAQK-------AKSEQLATLYMKGASGCN---- 502
Query: 551 AVNTSAEHRDFYPKATCANNQEWSMSKTSSMNLDLVLFQISRLKNPIPNALNESPACPDP 610
VN EH+ KA AN Q+ +T+ M+LDL+ FQ+SR++N ES A +P
Sbjct: 503 -VN---EHQGVSSKAIVANKQQCYNPRTARMDLDLMQFQLSRMRN------QESQARTEP 552
Query: 611 SEKWLKRLQHDTSDS-HVPCSKKPKVGDG---PLAGGTCTVFGQVFDCDSDS----TGMI 662
++WLKRLQ D+ D H+PCSK+ K GDG P+ GG ++ + CD +
Sbjct: 553 GDRWLKRLQIDSKDPHHLPCSKRSKAGDGSGRPVTGGASSMAPR---CDGSNDDDDIVDR 609
Query: 663 NHVKNKLICKGLTDQQSQEGSPMSAKSLNRWIGRWCRGGTPVFHGTSNLERQEA-KSGMP 721
+H + + + +G+ Q +E SP+ AKS +RWIGRWC+GG PV+H + +R+E K +
Sbjct: 610 DHKEEQGLDEGVEIQGGREASPVPAKSDDRWIGRWCQGGVPVYHEDDHDQRKEVTKPDLA 669
Query: 722 SDD---LEGQFPSIAAMAMMGRVMNKLRPCELQKRGPSVVWRT 761
+ D LEGQFPSI AMAMMGR M+K+RPC+ ++RG +VW+
Sbjct: 670 AGDSGGLEGQFPSIKAMAMMGRAMSKVRPCQEERRGSFMVWKA 712
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.126 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,092,724
Number of extensions: 1024742
Number of successful extensions: 1909
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1895
Number of HSP's successfully gapped: 2
Length of query: 764
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 655
Effective length of database: 11,344,475
Effective search space: 7430631125
Effective search space used: 7430631125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)