BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0686400 Os01g0686400|AK058740
         (80 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0686400  Similar to AR401                                    165   6e-42
Os01g0121100  Similar to SLL2                                      73   4e-14

>Os01g0686400 Similar to AR401
          Length = 80

 Score =  165 bits (418), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  SNLVEPGGIVVVTSCNHTKDELVQEVEDFSKTKSGKEHLDEGEGNVPQIFRYIDHVRTYP 60
          SNLVEPGGIVVVTSCNHTKDELVQEVEDFSKTKSGKEHLDEGEGNVPQIFRYIDHVRTYP
Sbjct: 1  SNLVEPGGIVVVTSCNHTKDELVQEVEDFSKTKSGKEHLDEGEGNVPQIFRYIDHVRTYP 60

Query: 61 TIMFGGVEGSQVCTVAFQRV 80
          TIMFGGVEGSQVCTVAFQRV
Sbjct: 61 TIMFGGVEGSQVCTVAFQRV 80



>Os01g0121100 Similar to SLL2
          Length = 286

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 1   SNLVEPGGIVVVTSCNHTKDELVQEVEDFSKTKSGKEHLDEGEGNVPQIFRYIDHVRTYP 60
           + LV PGGI+V+TSC+ TKDELVQEVE F++ K      +  + +   +F+YIDHV+TYP
Sbjct: 212 AGLVSPGGILVITSCSRTKDELVQEVESFNQRKLSAMGSEGAQASDTAVFKYIDHVQTYP 271

Query: 61  TIMFGGVEGSQVCTVAF 77
                 V+ S + TVAF
Sbjct: 272 I-----VDSSCITTVAF 283



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,859,163
Number of extensions: 104011
Number of successful extensions: 237
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 29
Effective length of database: 14,372,887
Effective search space: 416813723
Effective search space used: 416813723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)