Os01g0121100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SLL2.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0121100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SLL2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.87 | 0.225 | 11.6 | 0.365 | 0.694 | -0.751 | 0.393 | 0.0309 | 0.088 | 2.19 | 80.5 | 1371 | -- | -- |
| 22.85 | 0.223 | 11.6 | 0.359 | 0.71 | -0.754 | 0.395 | -- | 0.0892 | 2.17 | 80.99 | 1343 | -- | -- |
| 23.37 | 0.225 | 11.6 | 0.358 | 0.724 | -0.76 | -- | 0.162 | 0.0869 | 2.19 | 80.79 | 1311 | -- | -- |
| 23.41 | 0.225 | 11.6 | 0.349 | 0.725 | -0.752 | -- | -- | 0.0896 | 2.2 | 81 | 1314 | -- | -- |
| 36.74 | 0.282 | 11.5 | 0.248 | -- | -0.878 | -- | 0.0268 | 0.13 | -- | 161.7 | 53 | -- | -- |
| 36.35 | 0.283 | 11.5 | 0.232 | 0.626 | -- | 0.244 | -- | 0.117 | 2.19 | -- | -- | -- | -- |
| 36.57 | 0.283 | 11.5 | 0.225 | 0.628 | -- | -- | -- | 0.115 | 2.25 | -- | -- | -- | -- |
| 36.73 | 0.282 | 11.5 | 0.246 | -- | -0.873 | -- | -- | 0.131 | -- | 130.7 | 63 | -- | -- |
| 26.41 | 0.239 | 11.6 | -- | 0.694 | -0.709 | -- | -- | 0.0739 | 2.29 | 84.54 | 1358 | -- | -- |
| 60.01 | 0.362 | 11.5 | 0.251 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 37.9 | 0.288 | 11.6 | -- | 0.632 | -- | -- | -- | 0.09 | 2.26 | -- | -- | -- | -- |
| 38.31 | 0.288 | 11.5 | -- | -- | -0.877 | -- | -- | 0.104 | -- | 154.2 | 53 | -- | -- |
| 61.67 | 0.367 | 11.5 | -- | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.60 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 2 | 22.64 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 4 | 22.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 5 | 22.66 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 12 | 22.69 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 36 | 22.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 60 | 22.79 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 112 | 22.85 | humidity | 80 | 1440 | < th | dose dependent | sin | 18 | NA |
| 117 | 22.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 127 | 22.86 | humidity | 70 | 1440 | < th | dose independent | sin | 12 | NA |
| 177 | 22.91 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 262 | 22.99 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 279 | 23.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 280 | 23.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 287 | 23.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 314 | 23.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 322 | 23.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 344 | 23.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 350 | 23.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 358 | 23.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 366 | 23.15 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 371 | 23.16 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 391 | 23.20 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 415 | 23.23 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 417 | 23.24 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 428 | 23.26 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 429 | 23.26 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 430 | 23.26 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 433 | 23.26 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 435 | 23.27 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 479 | 23.31 | radiation | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 508 | 23.34 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 537 | 23.37 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 564 | 23.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 624 | 23.45 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 626 | 23.46 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 630 | 23.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 662 | 23.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 677 | 23.50 | radiation | 20 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 678 | 23.51 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 721 | 23.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 736 | 23.51 | radiation | 40 | 1440 | < th | dose dependent | sin | 12 | NA |
| 752 | 23.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 823 | 23.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 839 | 23.58 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 841 | 23.58 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 870 | 23.59 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 886 | 23.59 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 963 | 23.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |