BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0121100 Os01g0121100|AK100063
         (286 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66680.1  | chr1:24866352-24868888 REVERSE LENGTH=359          252   1e-67
AT4G34360.1  | chr4:16432011-16433752 FORWARD LENGTH=249           54   1e-07

>AT1G66680.1 | chr1:24866352-24868888 REVERSE LENGTH=359
          Length = 358

 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/280 (48%), Positives = 186/280 (66%), Gaps = 42/280 (15%)

Query: 45  SGDFSFDKDVPDSADMEPPLLGLPNYHQDGSYAEYLANFQERSHTDD-WFGTENMDVLVS 103
           S D+S DK+ PD+      +LGL +Y  D +Y++ L NF+E  H  + WFG + M+++ S
Sbjct: 77  SSDYSSDKEEPDADGGGQSMLGLQSY-WDAAYSDELTNFREHGHAGEVWFGDDVMEIVTS 135

Query: 104 WTKNLC----------------------SNKDLRSCSVLDIGTGSGRLSQQLAKQGFSDL 141
           WTK+LC                      ++K L S +VLD+GTG+G L  QLAK+GFSDL
Sbjct: 136 WTKDLCVEISQRNMSVSENDVTTEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDL 195

Query: 142 TGIDHSEGAIEVARNLAIRDGFEHINFLVDDVLESKLERRFELVMDEGTLDTIGLHPDGP 201
           TG D+S+GA+E+A++L+ RDGF +I F+VDD+L++KLE++F+LVMD+GTLD IGLHPDGP
Sbjct: 196 TGTDYSDGAVELAQHLSQRDGFPNIRFMVDDILDTKLEQQFKLVMDKGTLDAIGLHPDGP 255

Query: 202 VKRMMYWQSVAGLVSPGGILVITSCSRTKDELVQEVESFNQRK-------------LSAM 248
           VKR+MYW SV+ LV+PGGILVITSC+ TKDELV+EVE+FN RK             + + 
Sbjct: 256 VKRVMYWDSVSKLVAPGGILVITSCNHTKDELVEEVENFNIRKSNLCRGDGNDANNVLSS 315

Query: 249 GSEGAQASDTAVFKYIDHVQTYPIVD-----SSCITTVAF 283
           GSE A   D   F+Y+ HV+TYP         S + TVAF
Sbjct: 316 GSEAASRIDQPPFEYLSHVRTYPTFMFSGSVGSRVATVAF 355



>AT4G34360.1 | chr4:16432011-16433752 FORWARD LENGTH=249
          Length = 248

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 9/116 (7%)

Query: 116 SCSVLDIGTGSGRLSQQLAKQGFSDLTGIDHSEGAIEVARNLAIRDGFEHINFLVDDVLE 175
           S SVL++G G+ +L ++L K G  D+T ID S  A+E  ++  +  G++ I  +  D+L+
Sbjct: 51  SSSVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLD 110

Query: 176 SKLE-RRFELVMDEGTLDTIGL--------HPDGPVKRMMYWQSVAGLVSPGGILV 222
              +   F++V+++GT+D + +         P+   K M     V  ++ P GI +
Sbjct: 111 LPFDSESFDVVIEKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFI 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,311,964
Number of extensions: 263227
Number of successful extensions: 552
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)