BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0121100 Os01g0121100|AK100063
         (286 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0121100  Similar to SLL2                                     552   e-157
AK107640                                                           74   1e-13
Os01g0686400  Similar to AR401                                     72   4e-13

>Os01g0121100 Similar to SLL2
          Length = 286

 Score =  552 bits (1422), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/286 (94%), Positives = 270/286 (94%)

Query: 1   GLGLGFEVGRARHGGDTVAARGPGDLXXXXXXXXXXXXXXXXNPSGDFSFDKDVPDSADM 60
           GLGLGFEVGRARHGGDTVAARGPGDL                NPSGDFSFDKDVPDSADM
Sbjct: 1   GLGLGFEVGRARHGGDTVAARGPGDLPAASGPAAATTASVAANPSGDFSFDKDVPDSADM 60

Query: 61  EPPLLGLPNYHQDGSYAEYLANFQERSHTDDWFGTENMDVLVSWTKNLCSNKDLRSCSVL 120
           EPPLLGLPNYHQDGSYAEYLANFQERSHTDDWFGTENMDVLVSWTKNLCSNKDLRSCSVL
Sbjct: 61  EPPLLGLPNYHQDGSYAEYLANFQERSHTDDWFGTENMDVLVSWTKNLCSNKDLRSCSVL 120

Query: 121 DIGTGSGRLSQQLAKQGFSDLTGIDHSEGAIEVARNLAIRDGFEHINFLVDDVLESKLER 180
           DIGTGSGRLSQQLAKQGFSDLTGIDHSEGAIEVARNLAIRDGFEHINFLVDDVLESKLER
Sbjct: 121 DIGTGSGRLSQQLAKQGFSDLTGIDHSEGAIEVARNLAIRDGFEHINFLVDDVLESKLER 180

Query: 181 RFELVMDEGTLDTIGLHPDGPVKRMMYWQSVAGLVSPGGILVITSCSRTKDELVQEVESF 240
           RFELVMDEGTLDTIGLHPDGPVKRMMYWQSVAGLVSPGGILVITSCSRTKDELVQEVESF
Sbjct: 181 RFELVMDEGTLDTIGLHPDGPVKRMMYWQSVAGLVSPGGILVITSCSRTKDELVQEVESF 240

Query: 241 NQRKLSAMGSEGAQASDTAVFKYIDHVQTYPIVDSSCITTVAFSHS 286
           NQRKLSAMGSEGAQASDTAVFKYIDHVQTYPIVDSSCITTVAFSHS
Sbjct: 241 NQRKLSAMGSEGAQASDTAVFKYIDHVQTYPIVDSSCITTVAFSHS 286



>AK107640 
          Length = 542

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 53/254 (20%)

Query: 71  HQDGSYAEYLANFQERSHTDD-WFGTENMDVLVSWTKN---------LCSNKDLRSCSVL 120
           H D  YA  ++ F E     + WFG + +  ++ + +            S ++ ++ +VL
Sbjct: 304 HWDEVYAREVSVFNEIGEEGEVWFGEDAVMRMIRFLETYYTDTVAGEFSSEEEGKAPAVL 363

Query: 121 DIGTGSGRLSQQLAKQGF--------SDLTGIDHSEGAIEVARNLAIRDG--FEHINFLV 170
           D+GTG+G L  ++ +           S L G+D+S  +IE+AR++A + G   E + F  
Sbjct: 364 DLGTGNGHLLFEMLESSADLEEVVAPSRLVGVDYSAASIELARSIATKRGGTCEEVRFET 423

Query: 171 DDVLE------------SKL---ERRFELVMDEGTLDTIGLHP---DGPVKRMMYWQSVA 212
            D+L+            S+L   E  ++LV D+GTLD I L     DG +    Y ++VA
Sbjct: 424 ADILDPANVQHLVDMPRSQLGCSEVGWDLVCDKGTLDAIALSSQPIDGTLPIDRYTEAVA 483

Query: 213 GLVSPGGILVITSCSRTKDELVQEVESFNQRKLSAMGSEGAQASDTAVFKYIDHVQTYPI 272
            L   G + +ITSC+ T+ ELV         + +A G    Q   T  F       T+  
Sbjct: 484 RLTKKGAVFLITSCNFTEAELVA--------RFTAHGFAVQQVVPTPAF-------TFGG 528

Query: 273 VDSSCITTVAFSHS 286
              S  TT+AF  +
Sbjct: 529 AKGSTTTTIAFERA 542



>Os01g0686400 Similar to AR401
          Length = 80

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 212 AGLVSPGGILVITSCSRTKDELVQEVESFNQRKLSAMGSEGAQASDTAVFKYIDHVQTYP 271
           + LV PGGI+V+TSC+ TKDELVQEVE F++ K      +  + +   +F+YIDHV+TYP
Sbjct: 1   SNLVEPGGIVVVTSCNHTKDELVQEVEDFSKTKSGKEHLDEGEGNVPQIFRYIDHVRTYP 60

Query: 272 I-----VDSSCITTVAF 283
                 V+ S + TVAF
Sbjct: 61  TIMFGGVEGSQVCTVAF 77



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,113,832
Number of extensions: 422963
Number of successful extensions: 830
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)