Os01g0686400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AR401.
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Os01g0686400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AR401.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.38 | 0.222 | 10.7 | 1.13 | 0.688 | -0.526 | 0.383 | 0.247 | 0.348 | 4.14 | 23.98 | 5966 | -- | -- |
| 22.32 | 0.22 | 10.7 | 1.14 | 0.707 | -0.606 | 0.425 | -- | 0.361 | 4.14 | 22.7 | 5967 | -- | -- |
| 22.73 | 0.222 | 10.7 | 1.12 | 0.708 | -0.581 | -- | 0.138 | 0.351 | 4.15 | 22.8 | 6027 | -- | -- |
| 22.69 | 0.222 | 10.7 | 1.12 | 0.692 | -0.642 | -- | -- | 0.361 | 4.12 | 22.35 | 6017 | -- | -- |
| 46.55 | 0.318 | 10.7 | 1.12 | -- | -0.559 | -- | 0.54 | 0.334 | -- | 29.53 | 2685 | -- | -- |
| 26.67 | 0.242 | 10.7 | 1.46 | 0.696 | -- | 0.382 | -- | 0.497 | 4.12 | -- | -- | -- | -- |
| 27.08 | 0.244 | 10.7 | 1.45 | 0.698 | -- | -- | -- | 0.495 | 4.12 | -- | -- | -- | -- |
| 46.84 | 0.319 | 10.7 | 1.23 | -- | -0.585 | -- | -- | 0.36 | -- | 27.7 | 2690 | -- | -- |
| 26.72 | 0.241 | 10.8 | -- | 0.688 | -1.24 | -- | -- | 0.0377 | 4.19 | 21.92 | 47520 | -- | -- |
| 53.53 | 0.342 | 10.7 | 1.48 | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
| 82.78 | 0.426 | 10.7 | -- | 0.726 | -- | -- | -- | 0.333 | 4.09 | -- | -- | -- | -- |
| 52.21 | 0.337 | 10.8 | -- | -- | -1.27 | -- | -- | 0.0413 | -- | 22.19 | 47520 | -- | -- |
| 111.46 | 0.493 | 10.7 | -- | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 2 | 20.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 5 | 20.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 6 | 20.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 8 | 20.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 56 | 20.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 68 | 20.97 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 158 | 21.28 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 168 | 21.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 177 | 21.32 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 180 | 21.33 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 181 | 21.33 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 190 | 21.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 197 | 21.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 16 |
| 198 | 21.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 215 | 21.37 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 220 | 21.38 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 221 | 21.38 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 251 | 21.40 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 254 | 21.40 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 282 | 21.43 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 289 | 21.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 290 | 21.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 316 | 21.46 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 451 | 21.57 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 481 | 21.60 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 531 | 21.64 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 700 | 21.76 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 794 | 21.81 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 21 |
| 796 | 21.82 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 803 | 21.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 804 | 21.82 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 892 | 21.87 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 940 | 21.89 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 980 | 21.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 995 | 21.92 | humidity | 50 | 43200 | < th | dose dependent | sin | 12 | NA |