BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0680700 Os01g0680700|AK121420
(384 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0680700 Protein of unknown function DUF1639 family pro... 489 e-138
AK060234 142 4e-34
Os05g0556500 Protein of unknown function DUF1639 family pro... 109 3e-24
Os03g0807200 Protein of unknown function DUF1639 family pro... 85 1e-16
>Os01g0680700 Protein of unknown function DUF1639 family protein
Length = 384
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 260/384 (67%), Positives = 260/384 (67%)
Query: 1 MRGSLEVHAIGRHAASPCALRLKALPALDMMRYQRLSPDCLPLANXXXXXXXXVTRKPAS 60
MRGSLEVHAIGRHAASPCALRLKALPALDMMRYQRLSPDCLPLAN VTRKPAS
Sbjct: 1 MRGSLEVHAIGRHAASPCALRLKALPALDMMRYQRLSPDCLPLANGGGGGSGSVTRKPAS 60
Query: 61 RSCKDDDGGMAVAADXXXXXXXXXXXXXDSKPLXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
RSCKDDDGGMAVAAD DSKPL
Sbjct: 61 RSCKDDDGGMAVAADSSRLSSYLPSSQLDSKPLRARAPQPSSSSAAAWSPARDHAHAHHN 120
Query: 121 XXXXXXXXXXXXXXXXXXXGAGTGGDVLLQWGHNKXXXXXXXXXXXXXXXXXXXXXXXXX 180
GAGTGGDVLLQWGHNK
Sbjct: 121 HHHHHHPSDSSDTASPSSNGAGTGGDVLLQWGHNKRSRCRRDASSSANAAPSSSQRRQTA 180
Query: 181 XXXGKILRRSSAPAEKLMXXXXXSTTTGSYTRGSNLRSASSFPTRSXXXXXVGDAHHHRS 240
GKILRRSSAPAEKLM STTTGSYTRGSNLRSASSFPTRS VGDAHHHRS
Sbjct: 181 SAAGKILRRSSAPAEKLMPPPPPSTTTGSYTRGSNLRSASSFPTRSAAAAAVGDAHHHRS 240
Query: 241 AVEERSGGGYKRSPDKAHKSALDAALHMDSKNNXXXXXXDSSVTANGGAGAGEKIGSERF 300
AVEERSGGGYKRSPDKAHKSALDAALHMDSKNN DSSVTANGGAGAGEKIGSERF
Sbjct: 241 AVEERSGGGYKRSPDKAHKSALDAALHMDSKNNHHHHHHDSSVTANGGAGAGEKIGSERF 300
Query: 301 ELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRYXX 360
ELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRY
Sbjct: 301 ELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRYEV 360
Query: 361 XXXXXXXXXXXGLKGMESMDSDSE 384
GLKGMESMDSDSE
Sbjct: 361 REKKCVKKRRRGLKGMESMDSDSE 384
>AK060234
Length = 148
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 72/93 (77%)
Query: 1 MRGSLEVHAIGRHAASPCALRLKALPALDMMRYQRLSPDCLPLANXXXXXXXXVTRKPAS 60
MRGSLEVHAIGRHAASPCALRLKALPALDMMRYQRLSPDCLPLAN VTRKPAS
Sbjct: 1 MRGSLEVHAIGRHAASPCALRLKALPALDMMRYQRLSPDCLPLANGGGGGSGSVTRKPAS 60
Query: 61 RSCKDDDGGMAVAADXXXXXXXXXXXXXDSKPL 93
RSCKDDDGGMAVAAD DSKPL
Sbjct: 61 RSCKDDDGGMAVAADSSRLSSYLPSSQLDSKPL 93
>Os05g0556500 Protein of unknown function DUF1639 family protein
Length = 506
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 107/254 (42%), Gaps = 47/254 (18%)
Query: 147 VLLQWGHNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--KILRRSSAPAEKLMXXXXXS 204
VLLQWGHNK KI RRSSAPAEKLM S
Sbjct: 161 VLLQWGHNKRSRGRRDASASSSSAAAPSPQRRQAAAAAGVKIQRRSSAPAEKLMPPP--S 218
Query: 205 TTTGSYTRGSNLRSASSFPTRSXXXXXVG----DAHHHRSAVEERSG------------- 247
TT +R S LR SS P R A H S++ SG
Sbjct: 219 TTP---SRSSTLRVTSSLPARGGGGGDAHHHGRSALPHNSSIHRCSGEFAFVAMLEFDGM 275
Query: 248 -----GGYKRSPDKAHKSALDAALH--------------MDSKNNXXXXXXDSSVTAN-- 286
G + KA K A H DSK A+
Sbjct: 276 MMIRSGEQSAAATKAEKQQQRPAAHRVAEAGGVVMALAKTDSKYQHHTGHGGHGQAADHH 335
Query: 287 --GGAGAGEKIGSERFELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYV 344
+ +++ ELPRIY +LSRKEKE+DF+ MKGTKLPQRPKKR K V+K + +V
Sbjct: 336 GPSSSSKAATAAAQKIELPRIYTTLSRKEKEEDFMAMKGTKLPQRPKKRPKLVEKQVNFV 395
Query: 345 FPGMWLSDLTRGRY 358
PGMWLSD+TR +Y
Sbjct: 396 CPGMWLSDVTRSKY 409
>Os03g0807200 Protein of unknown function DUF1639 family protein
Length = 210
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 302 LPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRYXXX 361
LPR +ISLS KEKE+DF+ MKG KLPQRPKKR K + K L V PG WLSDL+ RY
Sbjct: 129 LPRFFISLSNKEKEEDFMAMKGCKLPQRPKKRPKLMQKCLLMVSPGAWLSDLSHERYEVR 188
Query: 362 XXXXXXXXXXGLKGMESMDSDSE 384
GLK + +SDSE
Sbjct: 189 EKKCARKRARGLKAL-CNESDSE 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,783,804
Number of extensions: 331406
Number of successful extensions: 558
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 5
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)