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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0680700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1639 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0183) R2 : 0.448
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.849 (0.0454) R2dC : 0.424 R2C : 0.423
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0385) R2dN8 : 0.0242 R2N8 : 0.0231
σ : 0.345
deviance : 54.36
__
_____
C
peak time of C : 2.86
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.36 0.287 12.7 0.644 0.315 0.727 0.925 -0.649 0.274 5.54 31.11 198 -- --
38.24 0.288 12.7 0.625 0.323 0.904 0.883 -- 0.278 6.18 56.89 176 -- --
38.68 0.29 12.7 0.643 0.412 0.698 -- -0.36 0.262 4.35 45.34 180 -- --
38.81 0.29 12.7 0.624 0.426 0.688 -- -- 0.26 3.99 60 204 -- --
42.12 0.302 12.7 0.651 -- 1.11 -- -0.183 0.299 -- 59.66 280 -- --
44.67 0.313 12.7 0.604 0.837 -- -0.075 -- 0.218 2.83 -- -- -- --
44.68 0.313 12.7 0.606 0.838 -- -- -- 0.219 2.85 -- -- -- --
42.16 0.302 12.7 0.656 -- 1.1 -- -- 0.3 -- 98.24 280 -- --
48.96 0.326 12.7 -- 0.499 0.652 -- -- 0.185 4 83.85 163 -- --
85.23 0.431 12.7 0.642 -- -- -- -- 0.24 -- -- -- -- --
54.36 0.345 12.8 -- 0.849 -- -- -- 0.151 2.86 -- -- -- --
53.49 0.341 12.7 -- -- 1.09 -- -- 0.227 -- 116 277 -- --
96.08 0.458 12.8 -- -- -- -- -- 0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.02 radiation 20.0 270 < th dose independent rect. 15 18
3 33.24 radiation 40.0 270 < th dose independent rect. 2 9
4 33.30 radiation 40.0 270 < th dose dependent rect. 15 18
14 33.71 radiation 40.0 270 < th dose independent rect. 14 8
15 33.71 wind 9.0 270 < th dose independent rect. 22 16
17 33.74 atmosphere 995.0 270 > th dose independent rect. 14 8
19 33.81 wind 9.0 270 < th dose independent rect. 8 8
21 33.88 wind 1.0 270 > th dose independent rect. 14 8
24 33.94 atmosphere 1015.0 270 < th dose independent rect. 14 8
27 33.97 radiation 40.0 270 < th dose dependent rect. 3 8
28 33.98 atmosphere 995.0 270 > th dose independent rect. 16 16
32 34.07 temperature 10.0 270 > th dose independent rect. 14 8
33 34.07 temperature 10.0 270 > th dose independent rect. 22 16
34 34.07 atmosphere 995.0 270 > th dose independent rect. 22 16
39 34.16 precipitation 0.1 270 < th dose independent rect. 16 16
40 34.16 precipitation 0.1 270 < th dose dependent rect. 16 16
44 34.21 precipitation 0.1 270 < th dose independent rect. 8 8
45 34.21 precipitation 0.1 270 < th dose dependent rect. 8 8
47 34.22 temperature 10.0 270 > th dose independent rect. 8 8
48 34.22 atmosphere 1015.0 270 < th dose independent rect. 8 8
49 34.22 precipitation 0.1 270 < th dose independent rect. 14 8
50 34.22 temperature 10.0 270 > th dose independent rect. 16 16
51 34.22 precipitation 0.1 270 < th dose dependent rect. 14 8
59 34.31 precipitation 0.1 270 < th dose independent rect. 22 16
60 34.31 precipitation 0.1 270 < th dose dependent rect. 22 16
64 34.35 wind 9.0 270 < th dose independent rect. 16 16
75 34.45 wind 9.0 270 < th dose independent rect. 14 8
82 34.54 humidity 50.0 270 > th dose independent rect. 22 16
85 34.58 wind 1.0 270 > th dose independent rect. 8 8
95 34.64 atmosphere 1015.0 270 < th dose independent rect. 16 16
96 34.65 radiation 1.0 270 > th dose independent rect. 8 8
105 34.73 humidity 50.0 270 > th dose independent rect. 16 16
107 34.75 atmosphere 995.0 270 > th dose independent rect. 8 8
123 34.80 temperature 30.0 270 < th dose independent rect. 2 8
131 34.85 humidity 50.0 270 > th dose independent rect. 8 8
134 34.88 radiation 40.0 270 < th dose independent rect. 3 18
137 34.90 radiation 20.0 90 < th dose dependent rect. 5 19
175 35.07 radiation 40.0 270 < th dose independent rect. 2 20
190 35.14 wind 9.0 270 < th dose independent rect. 10 16
197 35.15 temperature 30.0 90 < th dose independent rect. 17 16
248 35.29 humidity 50.0 270 > th dose independent rect. 14 8
260 35.32 radiation 40.0 270 < th dose dependent rect. 3 18
281 35.38 atmosphere 1015.0 270 < th dose independent rect. 22 16
308 35.46 precipitation 0.1 270 < th dose independent rect. 2 8
311 35.46 radiation 20.0 90 < th dose independent rect. 5 19
312 35.46 precipitation 0.1 270 < th dose dependent rect. 2 8
365 35.60 radiation 40.0 270 < th dose dependent rect. 2 21
371 35.61 radiation 20.0 90 < th dose dependent sin 19 NA
384 35.63 radiation 40.0 270 < th dose dependent rect. 14 7
385 35.63 humidity 50.0 270 > th dose dependent rect. 2 8
389 35.64 wind 9.0 270 < th dose independent rect. 2 8
390 35.64 temperature 10.0 270 > th dose independent rect. 2 8
391 35.64 atmosphere 995.0 270 > th dose independent rect. 2 8
392 35.64 atmosphere 1015.0 270 < th dose independent rect. 2 8
393 35.64 temperature 10.0 270 > th dose independent rect. 10 16
406 35.67 humidity 50.0 270 > th dose independent rect. 2 8
434 35.75 wind 1.0 270 > th dose independent rect. 16 16
437 35.75 wind 9.0 270 < th dose dependent rect. 8 8
453 35.77 temperature 10.0 270 > th dose dependent rect. 2 7
482 35.82 radiation 1.0 10 < th dose independent rect. 17 7
506 35.86 radiation 10.0 10 < th dose dependent rect. 16 8
537 35.90 atmosphere 1015.0 10 < th dose independent rect. 17 7
572 35.94 atmosphere 995.0 270 > th dose dependent rect. 14 7
612 36.00 radiation 10.0 90 < th dose independent sin 20 NA
696 36.10 precipitation 0.1 270 < th dose independent rect. 10 16
699 36.10 precipitation 0.1 270 < th dose dependent rect. 10 16
711 36.12 atmosphere 995.0 10 > th dose independent rect. 17 7
756 36.18 wind 1.0 270 > th dose independent rect. 22 17
783 36.22 humidity 60.0 10 > th dose independent rect. 17 7
803 36.24 radiation 1.0 30 > th dose independent sin 20 NA
816 36.25 wind 9.0 10 < th dose independent rect. 24 17
829 36.28 humidity 90.0 270 < th dose independent rect. 8 8
865 36.33 humidity 90.0 270 < th dose independent rect. 15 7
867 36.33 radiation 40.0 10 < th dose independent rect. 18 16
885 36.35 radiation 10.0 10 < th dose dependent rect. 14 10
898 36.36 wind 9.0 270 < th dose dependent rect. 10 16
922 36.39 temperature 10.0 10 > th dose independent rect. 17 7
924 36.39 radiation 20.0 10 < th dose independent rect. 17 7
930 36.39 temperature 10.0 10 > th dose independent rect. 24 17
933 36.39 radiation 10.0 10 < th dose dependent rect. 10 14
936 36.40 temperature 30.0 10 < th dose independent rect. 17 7
950 36.42 temperature 30.0 270 < th dose independent rect. 14 7
951 36.42 precipitation 0.1 10 < th dose independent rect. 17 7
958 36.42 precipitation 0.1 10 < th dose dependent rect. 17 7