BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0680700 Os01g0680700|AK121420
(384 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20300.2 | chr4:10955813-10958865 FORWARD LENGTH=353 132 2e-31
AT1G55340.1 | chr1:20652605-20653469 FORWARD LENGTH=206 100 3e-21
AT3G03880.1 | chr3:998123-999029 FORWARD LENGTH=194 74 9e-14
AT3G60410.1 | chr3:22331612-22332680 FORWARD LENGTH=325 62 7e-10
AT1G25370.1 | chr1:8898046-8898934 REVERSE LENGTH=264 59 3e-09
AT1G68340.1 | chr1:25614440-25615335 REVERSE LENGTH=247 50 2e-06
AT4G17440.1 | chr4:9727848-9728823 FORWARD LENGTH=216 49 3e-06
>AT4G20300.2 | chr4:10955813-10958865 FORWARD LENGTH=353
Length = 352
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 123/265 (46%), Gaps = 29/265 (10%)
Query: 144 GGDVLLQWGHNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKILRRSSAPAEKLMXXXXX 203
GGDVLLQWG K GKI +S+ P + M
Sbjct: 93 GGDVLLQWGQRKRSRASRAEIRSTTTITTTADDSSSSSGQGKI--QSNKPQRRSMNPSMP 150
Query: 204 STTTGSYT---RGSNLRSA------SSFPTRSXXXXXVGDAHHHRSAVEER---SGGGYK 251
R +N R+ S FP+R+ + R+ + R GG K
Sbjct: 151 PPPPAPPIFSGRSTNPRNGFVIGKESFFPSRNLEDRSA-NGSPSRNNINGRMISRSGGSK 209
Query: 252 RSP---DKAHK--SALDAALH-MDSKNNXXXXXXDSSVTANGGAGAGEKIGSER----FE 301
RSP D+ K S D + D + S TA G +I ER E
Sbjct: 210 RSPPSPDQIEKRSSVRDQRQNGFDHQQQQHQRVNRSESTAQGHQEV--EINGEREKATQE 267
Query: 302 LPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRYX-- 359
PRIYI+LSRKEKE+DFL+MKGTKLP RP+KRAKN+DK LQ+ FPGMWLSDLT+ RY
Sbjct: 268 WPRIYIALSRKEKEEDFLVMKGTKLPHRPRKRAKNIDKALQFCFPGMWLSDLTKNRYEVR 327
Query: 360 XXXXXXXXXXXXGLKGMESMDSDSE 384
GLKGME+MD+DSE
Sbjct: 328 EKKNVKKQQKRRGLKGMENMDTDSE 352
>AT1G55340.1 | chr1:20652605-20653469 FORWARD LENGTH=206
Length = 205
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 56/82 (68%)
Query: 303 PRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRYXXXX 362
P++YI+LS KEKE+DFL MKG KLPQRPKKRAK V KTL V PG WLSDL + RY
Sbjct: 124 PKLYIALSNKEKEEDFLAMKGCKLPQRPKKRAKLVQKTLLLVSPGAWLSDLCKERYEVRE 183
Query: 363 XXXXXXXXXGLKGMESMDSDSE 384
GLK M SM+SDSE
Sbjct: 184 KKTSKKRPRGLKAMGSMESDSE 205
>AT3G03880.1 | chr3:998123-999029 FORWARD LENGTH=194
Length = 193
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 303 PRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRY-XXX 361
P+++I+LS KEKE+DF+ MKG K RPKKRAK + ++L V PG WL+DL RY
Sbjct: 111 PKLFITLSNKEKEEDFMAMKGCKPSHRPKKRAKLIQRSLLLVSPGTWLADLCPDRYDVRV 170
Query: 362 XXXXXXXXXXGLKGMESMDSDSE 384
GLK M +M++DS+
Sbjct: 171 KKSSKKRRARGLKAMGNMETDSD 193
>AT3G60410.1 | chr3:22331612-22332680 FORWARD LENGTH=325
Length = 324
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 282 SVTANGGAGAGEKIGSERFELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTL 341
S+ + G A + + PR+ ISLS+ E ++D + G+K +RPKKRAKNV K L
Sbjct: 242 SIRSRNGVDAKMATTERKEKKPRLSISLSKLEIDEDIYALTGSKPSRRPKKRAKNVQKQL 301
Query: 342 QYVFPGMWLSDLTRGRY 358
+FPG+W+ +++ Y
Sbjct: 302 DVLFPGLWMGNVSSEAY 318
>AT1G25370.1 | chr1:8898046-8898934 REVERSE LENGTH=264
Length = 263
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 281 SSVTANGGAGAGEKIGSERFELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKT 340
S V GG EK + P + LS+KE E+DF+ M G + P+RPKKR+K V K
Sbjct: 188 SPVRGGGGVVEAEK------KRPMFSMKLSKKEMEEDFIGMVGHRAPRRPKKRSKTVQKK 241
Query: 341 LQYVFPGMWLSDLTRGRY 358
L +FPG++L+++T Y
Sbjct: 242 LDSLFPGLYLTEVTHDAY 259
>AT1G68340.1 | chr1:25614440-25615335 REVERSE LENGTH=247
Length = 246
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Query: 265 ALHMDSKNNXXXXXXDSSVTANGGAGAGEKIGSERFELPRIYISLSRKEKEDDFLIMKGT 324
+L +DSKN + S+ N ++G +R R+ +LS+KE E+D+++M G
Sbjct: 152 SLGIDSKNQCKESVMNPSMLGN-------ELGKDR---SRLLYTLSKKEIEEDYMMMIGL 201
Query: 325 KLPQRPKKRAKNVDKTLQYVFPGMWLSDLTRGRY 358
K P+RPKKR++ V K + + +++++T Y
Sbjct: 202 KPPRRPKKRSRTVQKQIDLLNFASYITEITEDLY 235
>AT4G17440.1 | chr4:9727848-9728823 FORWARD LENGTH=216
Length = 215
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 288 GAGAGEKIGSERFELPRIYISLSRKEKEDDFLIMKGTKLPQRPKKRAKNVDKTLQYVFPG 347
G G GE + +E R++++L+R E E+D M G + +RP+KRAK + K L +FPG
Sbjct: 141 GLGGGE-VANENH---RLWVALARDEIEEDLFSMSGNRSSRRPRKRAKAMQKHLDVIFPG 196
Query: 348 MWL 350
+ L
Sbjct: 197 LGL 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,676,348
Number of extensions: 182031
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 9
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)