BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0672300 Os01g0672300|AK107129
         (417 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0672300  Conserved hypothetical protein                      573   e-164
Os05g0562400  DDT domain containing protein                       210   2e-54

>Os01g0672300 Conserved hypothetical protein
          Length = 417

 Score =  573 bits (1478), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/344 (84%), Positives = 289/344 (84%)

Query: 1   MQTADHSVPIGVRLLKLQLSTIEASIPPEAIQPFWTDGYRKSWGVKLHSTTSLEEIFQML 60
           MQTADHSVPIGVRLLKLQLSTIEASIPPEAIQPFWTDGYRKSWGVKLHSTTSLEEIFQML
Sbjct: 1   MQTADHSVPIGVRLLKLQLSTIEASIPPEAIQPFWTDGYRKSWGVKLHSTTSLEEIFQML 60

Query: 61  TLLEAAIKRDHLSSEFETTSELLNLNTQDNPSQNHVGLSGSAAVLPWVPDTTAAIALRML 120
           TLLEAAIKRDHLSSEFETTSELLNLNTQDNPSQNHVGLSGSAAVLPWVPDTTAAIALRML
Sbjct: 61  TLLEAAIKRDHLSSEFETTSELLNLNTQDNPSQNHVGLSGSAAVLPWVPDTTAAIALRML 120

Query: 121 DLDSAVSYMQNQKMERNGGDFMKPPSRFVAVKNAQELDPLETTGLDLFDGRWATXXXXXX 180
           DLDSAVSYMQNQKMERNGGDFMKPPSRFVAVKNAQELDPLETTGLDLFDGRWAT      
Sbjct: 121 DLDSAVSYMQNQKMERNGGDFMKPPSRFVAVKNAQELDPLETTGLDLFDGRWATGSGRRG 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKDENEASRKNXXXXXXXXXXXXXXXXX 240
                                           FKDENEASRKN                 
Sbjct: 181 RGRGSRGGSRGGRGRSRGGRVPRGISISSRIGFKDENEASRKNTRRGRTRGRGRGRGRRT 240

Query: 241 VRSRQPSEGKGRSIPKENLLGSFSMLSNAKAATVEESPRSSGADEWGLENRRPYIDGDEN 300
           VRSRQPSEGKGRSIPKENLLGSFSMLSNAKAATVEESPRSSGADEWGLENRRPYIDGDEN
Sbjct: 241 VRSRQPSEGKGRSIPKENLLGSFSMLSNAKAATVEESPRSSGADEWGLENRRPYIDGDEN 300

Query: 301 SSGSQLDQSEDNEENGQPMDEEYDEQVPDYSRGYSGGSRPHGMI 344
           SSGSQLDQSEDNEENGQPMDEEYDEQVPDYSRGYSGGSRPHGMI
Sbjct: 301 SSGSQLDQSEDNEENGQPMDEEYDEQVPDYSRGYSGGSRPHGMI 344



>Os05g0562400 DDT domain containing protein
          Length = 1397

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 136/170 (80%), Gaps = 5/170 (2%)

Query: 1    MQTADHSVPIGVRLLKLQLSTIEASIPPEAIQPFWTDGYRKSWGVKLHSTTSLEEIFQML 60
            MQ +D+SVP+G+RLLKL L+T+EAS+P EA++PFWTD YRKSWGVKL+ST+S +E+F+ML
Sbjct: 971  MQISDYSVPVGLRLLKLLLATVEASVPAEALEPFWTDVYRKSWGVKLYSTSSTKEVFEML 1030

Query: 61   TLLEAAIKRDHLSSEFETTSELLNLNTQDNPSQNHVGLSGSAAVLPWVPDTTAAIALRML 120
            T+LE AI+RD LSS+FETT+ELLNL+TQD+ S+N V  SGSA VLPWVPDT AA+ LR+L
Sbjct: 1031 TILEGAIRRDFLSSDFETTTELLNLSTQDSASRNTVPRSGSADVLPWVPDTVAAVVLRLL 1090

Query: 121  DLDSAVSYMQNQKM----ERNGGDFMKPPSRFVAVKNAQELDPLETTGLD 166
            DLDSA+SY   QK+    ER  G+FMK P R+   K  QE +P+  TG D
Sbjct: 1091 DLDSAISYTLRQKVGSNKERGAGEFMKLPPRYTPAKTKQETEPM-GTGFD 1139




 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 72/98 (73%), Gaps = 2/98 (2%)

Query: 241  VRSRQPSEGKGRSIPKENLLGSFSMLSNAKAATVEESPRSSGADEWGLENRRPYIDGDEN 300
            VR RQPS+   RSIPK NLLGSFSML NAK  T  ESP+SSGA+EWGLE R  Y+  DE+
Sbjct: 1222 VRPRQPSDIGARSIPKPNLLGSFSMLRNAKHTTAMESPQSSGAEEWGLERRPSYVKDDED 1281

Query: 301  SSGSQLDQSEDNEENGQPMDEEYDEQVPDYSRGYSGGS 338
            +S SQ    E +EEN +PM+EEYDE +PDYSR  SG S
Sbjct: 1282 NSASQ--SEESSEENSEPMNEEYDELLPDYSRDNSGSS 1317



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,662,395
Number of extensions: 414072
Number of successful extensions: 1533
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 3
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)