BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0641700 Os01g0641700|AK103294
         (269 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0641700  Conserved hypothetical protein                      496   e-141
Os01g0604700  Conserved hypothetical protein                      271   4e-73
Os05g0589000  Conserved hypothetical protein                      264   6e-71

>Os01g0641700 Conserved hypothetical protein
          Length = 269

 Score =  496 bits (1277), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/252 (94%), Positives = 239/252 (94%)

Query: 18  TPASDNATSPDSDGTNSAGPARSRIALQLDQRSLHFSVTAWVLIVALIGILPLTPRQLQY 77
           TPASDNATSPDSDGTNSAGPARSRIALQLDQRSLHFSVTAWVLIVALIGILPLTPRQLQY
Sbjct: 18  TPASDNATSPDSDGTNSAGPARSRIALQLDQRSLHFSVTAWVLIVALIGILPLTPRQLQY 77

Query: 78  KGYRLSLLGTTCTTGYALFAFYRLPRAGNMHAAQIFHHVASSKDFIPFMYCLMFVMSKLH 137
           KGYRLSLLGTTCTTGYALFAFYRLPRAGNMHAAQIFHHVASSKDFIPFMYCLMFVMSKLH
Sbjct: 78  KGYRLSLLGTTCTTGYALFAFYRLPRAGNMHAAQIFHHVASSKDFIPFMYCLMFVMSKLH 137

Query: 138 LKLVLVPVICWALEHVARFLRRHFTNSSLYRTYLEKPCTWVETNTTAVKFLSSNAEXXXX 197
           LKLVLVPVICWALEHVARFLRRHFTNSSLYRTYLEKPCTWVETNTTAVKFLSSNAE    
Sbjct: 138 LKLVLVPVICWALEHVARFLRRHFTNSSLYRTYLEKPCTWVETNTTAVKFLSSNAEILLG 197

Query: 198 XXXXXXXXXRQRNPMQTFMYWQLLKLMYHSPFTAGYHRAIWLKIGRTVNPYIHRYTPFLH 257
                    RQRNPMQTFMYWQLLKLMYHSPFTAGYHRAIWLKIGRTVNPYIHRYTPFLH
Sbjct: 198 FLLILSLFSRQRNPMQTFMYWQLLKLMYHSPFTAGYHRAIWLKIGRTVNPYIHRYTPFLH 257

Query: 258 DPINAGMRWWFR 269
           DPINAGMRWWFR
Sbjct: 258 DPINAGMRWWFR 269



>Os01g0604700 Conserved hypothetical protein
          Length = 354

 Score =  271 bits (693), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/260 (50%), Positives = 175/260 (67%), Gaps = 8/260 (3%)

Query: 18  TPASDNATSPDSDGTNSAGPA-------RSRIALQLDQRSLHFSVTAWVLIVALIGILPL 70
           TP+++N  + DS  +  +  A       R+  +L LD R++HFS+ AWVL+VA +GILP+
Sbjct: 95  TPSNENVRARDSGSSARSTAASQPSQTERTANSLWLDGRTIHFSINAWVLVVASLGILPI 154

Query: 71  TPRQLQYKGYRLSLLGTTCTTGYALFAFYRLPRAGNMHAAQIF-HHVASSKDFIPFMYCL 129
            P+ +  K YRLSLLGT C++ Y+L+  Y  PRA NM A Q +   +  +KDF+  M+ L
Sbjct: 155 LPKHIASKAYRLSLLGTICSSAYSLYVTYGKPRAWNMAAIQPWLQSIIVAKDFVHLMFSL 214

Query: 130 MFVMSKLHLKLVLVPVICWALEHVARFLRRHFTNSSLYRTYLEKPCTWVETNTTAVKFLS 189
           M   S +H K+ L+PV+CWAL+HVARFLRR+F  SSLYR YLE+PC WVETN T +  L 
Sbjct: 215 MMFTSNVHYKIALLPVLCWALDHVARFLRRNFARSSLYRQYLEEPCLWVETNNTTLSLLC 274

Query: 190 SNAEXXXXXXXXXXXXXRQRNPMQTFMYWQLLKLMYHSPFTAGYHRAIWLKIGRTVNPYI 249
           SNAE              +RN +QTFMY+ LLKLMYH+P T+GYH++ W +IGR VNPYI
Sbjct: 275 SNAEITLGFLMIVSLFSWRRNIIQTFMYFHLLKLMYHAPVTSGYHQSAWARIGRAVNPYI 334

Query: 250 HRYTPFLHDPINAGMRWWFR 269
           HRY PFL+ PI+A  RWW R
Sbjct: 335 HRYAPFLNTPISAVQRWWLR 354



>Os05g0589000 Conserved hypothetical protein
          Length = 378

 Score =  264 bits (674), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/227 (55%), Positives = 159/227 (70%), Gaps = 1/227 (0%)

Query: 44  LQLDQRSLHFSVTAWVLIVALIGILPLTPRQLQYKGYRLSLLGTTCTTGYALFAFYRLPR 103
           L+ D R++HFS+ AWVL+VA +G+LP+ P+ L  +  +LSLLGT  ++ Y+L++ Y  PR
Sbjct: 152 LRFDARTIHFSINAWVLVVAGLGMLPILPKHLADRACKLSLLGTILSSAYSLYSTYGKPR 211

Query: 104 AGNMHAAQ-IFHHVASSKDFIPFMYCLMFVMSKLHLKLVLVPVICWALEHVARFLRRHFT 162
           A NM A Q     V  +KDFI  M+ LM   S+LHLK+  +PV CWAL+HVARFLRR+F 
Sbjct: 212 AWNMPAVQGWLQAVLGTKDFIHLMFSLMLFTSQLHLKIAALPVFCWALDHVARFLRRNFA 271

Query: 163 NSSLYRTYLEKPCTWVETNTTAVKFLSSNAEXXXXXXXXXXXXXRQRNPMQTFMYWQLLK 222
            SS YR+YLE+PC WVETN T +  LSSNAE              QR+ +QTFMYWQ+LK
Sbjct: 272 RSSFYRSYLEEPCLWVETNNTTLSLLSSNAEIALGFLLIISLFSWQRSIIQTFMYWQVLK 331

Query: 223 LMYHSPFTAGYHRAIWLKIGRTVNPYIHRYTPFLHDPINAGMRWWFR 269
            MYH+P TA YH++ W KIGR VNPYIHRY PFL+ PI+A  RWWFR
Sbjct: 332 QMYHAPVTASYHQSAWAKIGRIVNPYIHRYAPFLNTPISAAQRWWFR 378



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,295,344
Number of extensions: 295752
Number of successful extensions: 658
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 3
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)