BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0637600 Os01g0637600|AK106980
         (269 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0637600  Similar to Peptide deformylase, chloroplast pr...   437   e-123
Os01g0636600  Similar to Peptide deformylase, chloroplast pr...   253   1e-67
Os01g0555800  Formylmethionine deformylase family protein          71   9e-13

>Os01g0637600 Similar to Peptide deformylase, chloroplast precursor (EC 3.5.1.88)
           (PDF) (Polypeptide deformylase)
          Length = 269

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/254 (87%), Positives = 221/254 (87%)

Query: 16  FASSFXXXXXXXXXXXXXSRMXXXXXXXXXXXXXXXXXXXXTAPPAEDEDFATAADLQFE 75
           FASSF             SRM                    TAPPAEDEDFATAADLQFE
Sbjct: 16  FASSFAPLLAAHPRALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFE 75

Query: 76  PPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVF 135
           PPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVF
Sbjct: 76  PPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVF 135

Query: 136 NPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAK 195
           NPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAK
Sbjct: 136 NPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAK 195

Query: 196 IKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESI 255
           IKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESI
Sbjct: 196 IKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESI 255

Query: 256 ENYKGRKDLISFSR 269
           ENYKGRKDLISFSR
Sbjct: 256 ENYKGRKDLISFSR 269



>Os01g0636600 Similar to Peptide deformylase, chloroplast precursor (EC 3.5.1.88)
           (PDF) (Polypeptide deformylase)
          Length = 198

 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/123 (99%), Positives = 122/123 (99%)

Query: 57  TAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKT 116
           TAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKT
Sbjct: 61  TAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKT 120

Query: 117 DGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYA 176
           DGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEE CLSFPGIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYA 180

Query: 177 NVV 179
           NVV
Sbjct: 181 NVV 183



>Os01g0555800 Formylmethionine deformylase family protein
          Length = 121

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 48/78 (61%)

Query: 147 IVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSAR 206
           +V++NP +   SKR  ++ EGCLS  G  A V R  +V++   D  G  IKV+ SG  AR
Sbjct: 19  LVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQAR 78

Query: 207 VFQHEFDHLQGILFFDRM 224
           + QHE DHL+G L+ D M
Sbjct: 79  ILQHECDHLEGTLYVDTM 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,248,911
Number of extensions: 287650
Number of successful extensions: 631
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 3
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)