Os01g0555800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Formylmethionine deformylase family protein.
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Os01g0555800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Formylmethionine deformylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 304.74 | 0.82 | 6.41 | -1.2 | 3.44 | 3.56 | -0.205 | 5.69 | -1.32 | 22.1 | 21.89 | 329 | 20 | -- |
| 318.65 | 0.831 | 6.47 | -1.94 | 3.26 | 3.92 | -0.884 | -- | -1.5 | 22.2 | 22.99 | 363 | 20.6 | -- |
| 303.54 | 0.811 | 6.4 | -1.18 | 3.47 | 3.6 | -- | 5.8 | -1.32 | 22 | 22.5 | 323 | 20.5 | -- |
| 320.81 | 0.834 | 6.49 | -1.91 | 3.36 | 4.04 | -- | -- | -1.53 | 22.1 | 23.2 | 368 | 21.2 | -- |
| 453.56 | 0.992 | 6.31 | -1.31 | -- | 5.22 | -- | 6.5 | -1.36 | -- | -7.583 | 1123 | 20.1 | -- |
| 531.35 | 1.08 | 6.4 | -1.23 | 3.46 | -- | 0.229 | -- | -1.09 | 20.1 | -- | -- | -- | -- |
| 531.5 | 1.08 | 6.4 | -1.24 | 3.46 | -- | -- | -- | -1.09 | 20.1 | -- | -- | -- | -- |
| 438.11 | 0.975 | 6.39 | -1.95 | -- | 4.91 | -- | -- | -1.44 | -- | -7.384 | 1033 | 18.9 | -- |
| 408.85 | 0.942 | 6.44 | -- | 3.3 | 3.42 | -- | -- | -1.25 | 21.7 | 23.3 | 356 | 21.2 | -- |
| 1187.39 | 1.61 | 6.32 | -1.27 | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
| 572.03 | 1.12 | 6.37 | -- | 3.47 | -- | -- | -- | -0.951 | 20.1 | -- | -- | -- | -- |
| 525.82 | 1.07 | 6.32 | -- | -- | 4.41 | -- | -- | -1.14 | -- | -20.86 | 993 | 18.5 | -- |
| 1230.01 | 1.64 | 6.28 | -- | -- | -- | -- | -- | -0.99 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 312.84 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 6 | 319.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 11 | 322.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 14 | 324.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 17 | 324.71 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 21 | 324.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 41 | 327.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 66 | 328.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 76 | 330.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 104 | 331.11 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 143 | 332.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 212 | 335.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 226 | 336.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 649 | 348.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 679 | 348.72 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 709 | 349.63 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 764 | 351.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 814 | 353.20 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 11 |
| 878 | 355.13 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 953 | 357.25 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |