BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0636400 Os01g0636400|J065021L21
         (181 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0636400  Conserved hypothetical protein                      342   1e-94
Os02g0706900  Esterase/lipase/thioesterase domain containing...    83   1e-16

>Os01g0636400 Conserved hypothetical protein
          Length = 181

 Score =  342 bits (876), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 166/181 (91%)

Query: 1   MVNLVEAPKPLVYFLLRRAGLRQHTVDVDGAGTVISFWMPEGKVPKDRGTVRDVAPEGAA 60
           MVNLVEAPKPLVYFLLRRAGLRQHTVDVDGAGTVISFWMPEGKVPKDRGTVRDVAPEGAA
Sbjct: 1   MVNLVEAPKPLVYFLLRRAGLRQHTVDVDGAGTVISFWMPEGKVPKDRGTVRDVAPEGAA 60

Query: 61  AADSXXXXXXXXXXXXXXXERPAVVLVHGFAAEGVVTWQFQVCTHAHVTSRHKILLLWGE 120
           AADS               ERPAVVLVHGFAAEGVVTWQFQVCTHAHVTSRHKILLLWGE
Sbjct: 61  AADSGKQQKAAAKPAGNGKERPAVVLVHGFAAEGVVTWQFQVCTHAHVTSRHKILLLWGE 120

Query: 121 NDNIFNIELAMTMKEQLGEKAMLQSISKAGHLVHIERPCVYNQHLKEFLAYVNAESPKET 180
           NDNIFNIELAMTMKEQLGEKAMLQSISKAGHLVHIERPCVYNQHLKEFLAYVNAESPKET
Sbjct: 121 NDNIFNIELAMTMKEQLGEKAMLQSISKAGHLVHIERPCVYNQHLKEFLAYVNAESPKET 180

Query: 181 A 181
           A
Sbjct: 181 A 181



>Os02g0706900 Esterase/lipase/thioesterase domain containing protein
          Length = 261

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 67/125 (53%), Gaps = 9/125 (7%)

Query: 1   MVNLVEAPKPLVYFLLRRAGLRQHTVDVDGAGTVISFWMPEGKVPKDRGTVRDVAPEGAA 60
           MVN VEA KPL+  L+R AGLR   V+++  GT +  W+P+  V K  GT+R V   G  
Sbjct: 1   MVNFVEAQKPLLKRLMRMAGLRPVDVEIE-PGTTMHIWVPKHHVSKKTGTIRPVVEHGGV 59

Query: 61  AADSXXXXXXXXXXXXXXXERPAVVLVHGFAAEGVVTWQFQVCTHAHVTSRHKI----LL 116
             D                 RP VVLVHGFAAEG+VTWQF       + SR+ +    LL
Sbjct: 60  DGDGEKAGAAKRKKSAAE-SRPNVVLVHGFAAEGIVTWQFNFGV---LVSRYNLYIPDLL 115

Query: 117 LWGEN 121
            +G++
Sbjct: 116 FFGKS 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,780,098
Number of extensions: 209201
Number of successful extensions: 339
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)