BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0634900 Os01g0634900|Os01g0634900
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0634900 CBS domain containing protein 497 e-141
Os03g0737000 CBS domain containing protein 188 4e-48
>Os01g0634900 CBS domain containing protein
Length = 258
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/258 (94%), Positives = 244/258 (94%)
Query: 1 MDLHGIRGKVALNPVLKLPQGELVVFTDQFEPGIGRRTSAGXXXXXXXXXXXXXXGITKA 60
MDLHGIRGKVALNPVLKLPQGELVVFTDQFEPGIGRRTSAG GITKA
Sbjct: 1 MDLHGIRGKVALNPVLKLPQGELVVFTDQFEPGIGRRTSAGLQHLLQELLRLKMQGITKA 60
Query: 61 LRFHGKQLKLTVLQHMNKGIFSWATLISRIQTESPTVIIPHIGLENIRVREILNAKGEAK 120
LRFHGKQLKLTVLQHMNKGIFSWATLISRIQTESPTVIIPHIGLENIRVREILNAKGEAK
Sbjct: 61 LRFHGKQLKLTVLQHMNKGIFSWATLISRIQTESPTVIIPHIGLENIRVREILNAKGEAK 120
Query: 121 AGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSE 180
AGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSE
Sbjct: 121 AGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSE 180
Query: 181 ETRVGDIMTEEDKLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
ETRVGDIMTEEDKLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD
Sbjct: 181 ETRVGDIMTEEDKLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
Query: 241 QQHQEVKQLKKYIRGDYY 258
QQHQEVKQLKKYIRGDYY
Sbjct: 241 QQHQEVKQLKKYIRGDYY 258
>Os03g0737000 CBS domain containing protein
Length = 205
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 138/207 (66%), Gaps = 15/207 (7%)
Query: 59 KALRFHGKQLKLTVLQHMNK-------GIFSWATLISRIQTESPTVIIPHIGLENIRVRE 111
+A+ HG LK VL+H++ ++S + +S Q E G E V +
Sbjct: 6 QAIGSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEES-------GFETATVAD 58
Query: 112 ILNAKGEAKAGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARK 171
IL +KG++ G+ WC T V++A+K MT HNVGALVV+K G +K +AGIVTERD+ RK
Sbjct: 59 ILKSKGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRK 118
Query: 172 ILLPGRPSEETRVGDIMTEEDKLITVSSNTNILQAMELMTERHIRHVPVFD-EKVVGMIT 230
I++ GR S+ T+VGDIMTEE++LITV +T +LQAM+LMTE+ IRH+PV D +VGM++
Sbjct: 119 IIVQGRSSKSTKVGDIMTEENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVS 178
Query: 231 IGDVVKTIVDQQHQEVKQLKKYIRGDY 257
IGD+V+ +V + +E+ +L YI+G Y
Sbjct: 179 IGDIVRAVVSEHREELNRLNAYIQGGY 205
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,257,633
Number of extensions: 252959
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)