Os03g0737000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os03g0737000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.97 | 0.552 | 13.4 | -0.251 | 1.97 | 1.24 | 0.781 | -0.912 | 0.227 | 19.8 | 19.6 | 900 | -- | -- |
| 139.76 | 0.551 | 13.4 | -0.132 | 1.96 | 1.39 | 0.602 | -- | 0.253 | 19.8 | 19.61 | 907 | -- | -- |
| 139.61 | 0.55 | 13.4 | -0.248 | 1.97 | 1.26 | -- | -0.73 | 0.233 | 19.9 | 19.6 | 921 | -- | -- |
| 140.78 | 0.553 | 13.4 | -0.141 | 1.96 | 1.38 | -- | -- | 0.255 | 19.9 | 19.63 | 907 | -- | -- |
| 339.19 | 0.858 | 13.4 | -0.419 | -- | 1.6 | -- | -0.39 | 0.0659 | -- | 20.62 | 730 | -- | -- |
| 180.06 | 0.629 | 13.3 | 0.391 | 2.07 | -- | 0.432 | -- | 0.509 | 20.1 | -- | -- | -- | -- |
| 180.6 | 0.629 | 13.3 | 0.378 | 2.07 | -- | -- | -- | 0.509 | 20.1 | -- | -- | -- | -- |
| 337.25 | 0.855 | 13.4 | -0.271 | -- | 1.61 | -- | -- | 0.037 | -- | 20.9 | 719 | -- | -- |
| 141.25 | 0.554 | 13.4 | -- | 1.96 | 1.32 | -- | -- | 0.279 | 19.9 | 19.65 | 891 | -- | -- |
| 416.45 | 0.954 | 13.3 | 0.36 | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
| 184.36 | 0.635 | 13.3 | -- | 2.07 | -- | -- | -- | 0.467 | 20.1 | -- | -- | -- | -- |
| 337.35 | 0.855 | 13.4 | -- | -- | 1.44 | -- | -- | 0.114 | -- | 21.22 | 730 | -- | -- |
| 419.87 | 0.956 | 13.3 | -- | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.43 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 20 | 127.46 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 31 | 128.36 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 35 | 128.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 39 | 129.06 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 46 | 129.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 57 | 129.89 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 69 | 130.15 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 121 | 131.60 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 143 | 132.16 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 159 | 132.47 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 199 | 133.05 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 202 | 133.12 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 4 |
| 292 | 134.76 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 296 | 134.88 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 303 | 134.97 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 385 | 136.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 464 | 137.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 467 | 137.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 471 | 137.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 493 | 137.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 565 | 138.42 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 885 | 141.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |