BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0737000 Os03g0737000|AK061742
(205 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10860.1 | chr5:3429173-3430142 REVERSE LENGTH=207 316 5e-87
AT1G47271.1 | chr1:17328856-17330343 FORWARD LENGTH=194 184 4e-47
AT3G52950.1 | chr3:19634866-19636536 FORWARD LENGTH=557 54 5e-08
AT2G36500.1 | chr2:15318473-15320083 FORWARD LENGTH=537 53 9e-08
AT5G63490.1 | chr5:25418716-25421970 REVERSE LENGTH=544 52 1e-07
AT5G50530.1 | chr5:20571876-20574922 REVERSE LENGTH=549 51 5e-07
AT5G50640.1 | chr5:20605218-20608264 REVERSE LENGTH=549 51 5e-07
AT4G34120.1 | chr4:16341194-16342893 FORWARD LENGTH=239 49 2e-06
>AT5G10860.1 | chr5:3429173-3430142 REVERSE LENGTH=207
Length = 206
Score = 316 bits (810), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 150/206 (72%), Positives = 181/206 (87%), Gaps = 1/206 (0%)
Query: 1 MQRAIQAIGSHGSLLKSAVLRHISAPKPSILPAVY-SRSMSVSSAQIEESGFETATVADI 59
MQ I++ S G+++K +VL+H+ P+I P+V+ SRS S A++EESGFE+ T++D+
Sbjct: 1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60
Query: 60 LKSKGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKI 119
+KSKGKSADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ +++AGI+TERDYLRKI
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120
Query: 120 IVQGRSSKSTKVGDIMTEENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSI 179
IVQGRSSKSTKVGDIMTEEN+LITV P+T+VL+AMQLMT+ RIRHIPVI GM+GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180
Query: 180 GDIVRAVVSEHREELNRLNAYIQGGY 205
GD+VRAVV EHREEL RLNAYIQGGY
Sbjct: 181 GDVVRAVVHEHREELQRLNAYIQGGY 206
>AT1G47271.1 | chr1:17328856-17330343 FORWARD LENGTH=194
Length = 193
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 131/180 (72%), Gaps = 7/180 (3%)
Query: 31 LPAVYSRSMS-----VSSAQIEESGFETATVADILKSKGKSADGSWLWCTTDDSVYDAVK 85
+P ++ R +S ++S E G E TVAD+L +K D +W+ C T+D+V DAVK
Sbjct: 15 VPKIHQRKVSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTNDTVSDAVK 73
Query: 86 SMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTKVGDIMTEENQLITVK 145
+M +HN+G+LVV++PG + IAGIVTERDY++KII GRSSK TKVG++MT+E++L+TV
Sbjct: 74 NMAKHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGEVMTDESKLVTVS 133
Query: 146 PDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSIGDIVRAVVSEHREELNRLNAYIQGGY 205
T +++AMQLM+E IRH+PVIDG +VG++S+ D+V+A+V EL RLN +I+G Y
Sbjct: 134 SGTNIIKAMQLMSENHIRHVPVIDGK-IVGLISMVDVVKAIVDHQNGELKRLNEFIKGDY 192
>AT3G52950.1 | chr3:19634866-19636536 FORWARD LENGTH=557
Length = 556
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 79 SVYDAVKSMTQHNVGALVVVKPGQDKS--IAGIVTERDYLRKIIVQGRSSKSTKVGDIMT 136
+V+DA + M V A ++ D S ++GIVT++D ++I +G T V +MT
Sbjct: 80 TVFDACRRMAARRVDACLLT----DSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMT 135
Query: 137 EENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSIGDIVRAVVSEHR---EE 193
I V D+ L+A+Q M + + RH+PV++ ++ ++ I + +S E+
Sbjct: 136 RNP--IFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQ 193
Query: 194 LNRLNAYIQG 203
+ L A ++G
Sbjct: 194 GSALAAAVEG 203
>AT2G36500.1 | chr2:15318473-15320083 FORWARD LENGTH=537
Length = 536
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 79 SVYDAVKSMTQHNVGALVVVKPGQDKS--IAGIVTERDYLRKIIVQGRSSKSTKVGDIMT 136
+V+DA + M V A+++ D S ++GIVT++D ++I +G + T V +MT
Sbjct: 78 TVFDACRRMAARRVDAVLLT----DSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMT 133
Query: 137 EENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSIGDIVRAVVS 188
I V D+ ++A+Q M + + RH+PV++ ++ ++ I + +S
Sbjct: 134 RNP--IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAIS 183
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 78 DSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTKVGDIMTE 137
D V+ A K M V ++++ + I GI+T +D L +++ Q S + T V +MT
Sbjct: 241 DPVFVASKKMRDLRVNSVIIAVGNK---IHGILTSKDILMRVVAQNLSPELTLVEKVMTP 297
Query: 138 ENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGM-VGMVSIGDIVRAVVS 188
+ ++ +T +L A+ +M + + H+PV D G V + + I A +S
Sbjct: 298 NPECASI--ETTILDALHIMHDGKFLHLPVFDKDGFAVACLDVLQITHAAIS 347
>AT5G63490.1 | chr5:25418716-25421970 REVERSE LENGTH=544
Length = 543
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 79 SVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTKVGDIMTEE 138
++Y+A K M V AL++ ++ + GI+T++D ++I Q + + T V +MT+
Sbjct: 71 TIYEACKRMASRRVDALLLT--DSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKN 128
Query: 139 NQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSIG 180
V +T ++A+Q M + + RH+PV++ ++ ++ I
Sbjct: 129 PMF--VLSETLAVEALQKMVQGKFRHLPVVENGEVIALLDIA 168
>AT5G50530.1 | chr5:20571876-20574922 REVERSE LENGTH=549
Length = 548
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 79 SVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTKVGDIMTEE 138
++++A + M V AL++ + + GI+T+RD K+I + + + T V +MT+
Sbjct: 79 TLFEACRRMAARRVDALLLTD--SNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTK- 135
Query: 139 NQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSIG 180
+ V DT ++A+Q M + + RH+PV++ ++ ++ I
Sbjct: 136 -NPVFVLSDTIAVEALQKMVQGKFRHLPVVENGEVIALLDIA 176
>AT5G50640.1 | chr5:20605218-20608264 REVERSE LENGTH=549
Length = 548
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 79 SVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTKVGDIMTEE 138
++++A + M V AL++ + + GI+T+RD K+I + + + T V +MT+
Sbjct: 79 TLFEACRRMAARRVDALLLTD--SNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTK- 135
Query: 139 NQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVGMVSIG 180
+ V DT ++A+Q M + + RH+PV++ ++ ++ I
Sbjct: 136 -NPVFVLSDTIAVEALQKMVQGKFRHLPVVENGEVIALLDIA 176
>AT4G34120.1 | chr4:16341194-16342893 FORWARD LENGTH=239
Length = 238
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 79 SVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTK-------- 130
SV DA++ + + V L V+ + ++ G+V++ D L + GRS T
Sbjct: 97 SVDDALELLVEKKVTGLPVID--DNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST 154
Query: 131 ------------------VGDIMTEENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTG 172
VGD+MT + V+ T + A +L+ E + R +PV+D G
Sbjct: 155 WKTFNELQKLISKTYGKVVGDLMTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADG 212
Query: 173 -MVGMVSIGDIVRAVVSEHREELN 195
++G+++ G++VRA + RE N
Sbjct: 213 KLIGILTRGNVVRAALQIKRETEN 236
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,863,839
Number of extensions: 137772
Number of successful extensions: 462
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 12
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)