BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0632300 Os01g0632300|Os01g0632300
         (475 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0632300  Conserved hypothetical protein                      931   0.0  
Os09g0103200  Conserved hypothetical protein                      698   0.0  

>Os01g0632300 Conserved hypothetical protein
          Length = 475

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/475 (96%), Positives = 460/475 (96%)

Query: 1   MAVDQPIRIKIMLGMKGGRGRTSKFAGLKGLLWKAGIAGDEEVKPRGNDIHRRWLRVRRV 60
           MAVDQPIRIKIMLGMKGGRGRTSKFAGLKGLLWKAGIAGDEEVKPRGNDIHRRWLRVRRV
Sbjct: 1   MAVDQPIRIKIMLGMKGGRGRTSKFAGLKGLLWKAGIAGDEEVKPRGNDIHRRWLRVRRV 60

Query: 61  EEDSETDFSFKDANKLCSLVXXXXXXXXXXXXXXXESYVRSDEVSCEKVIAHVEKCFDFQ 120
           EEDSETDFSFKDANKLCSLV               ESYVRSDEVSCEKVIAHVEKCFDFQ
Sbjct: 61  EEDSETDFSFKDANKLCSLVRKQKALAKKKRKYLAESYVRSDEVSCEKVIAHVEKCFDFQ 120

Query: 121 SDGYSHHIVQDGLQFFKLQKGKDGSLSPQGLADMQLIINKLSNEALHSVANIVTHNRVSF 180
           SDGYSHHIVQDGLQFFKLQKGKDGSLSPQGLADMQLIINKLSNEALHSVANIVTHNRVSF
Sbjct: 121 SDGYSHHIVQDGLQFFKLQKGKDGSLSPQGLADMQLIINKLSNEALHSVANIVTHNRVSF 180

Query: 181 EKTRPAMNKIIEDHLPQYLANLRDENDMSQLSHILTNSFSCRSNSLNIATPISPKMLSSI 240
           EKTRPAMNKIIEDHLPQYLANLRDENDMSQLSHILTNSFSCRSNSLNIATPISPKMLSSI
Sbjct: 181 EKTRPAMNKIIEDHLPQYLANLRDENDMSQLSHILTNSFSCRSNSLNIATPISPKMLSSI 240

Query: 241 NQALNVLGTLTIQSLVAMKRKLDEISFTPKFSFVPRISRKAHMVTVIRKQCNKMISRVGE 300
           NQALNVLGTLTIQSLVAMKRKLDEISFTPKFSFVPRISRKAHMVTVIRKQCNKMISRVGE
Sbjct: 241 NQALNVLGTLTIQSLVAMKRKLDEISFTPKFSFVPRISRKAHMVTVIRKQCNKMISRVGE 300

Query: 301 SGDLPKNLAKALSVVNLYRKQELKCMDISQAEFFPFSKKAIFLQNDVLNAIWSIQKLKKG 360
           SGDLPKNLAKALSVVNLYRKQELKCMDISQAEFFPFSKKAIFLQNDVLNAIWSIQKLKKG
Sbjct: 301 SGDLPKNLAKALSVVNLYRKQELKCMDISQAEFFPFSKKAIFLQNDVLNAIWSIQKLKKG 360

Query: 361 DLKLLRPILCQGSNDEMLFKTTVRRVIYQMRHQMPLRQKIDFTEQRKGAEVEAVLNLMNC 420
           DLKLLRPILCQGSNDEMLFKTTVRRVIYQMRHQMPLRQKIDFTEQRKGAEVEAVLNLMNC
Sbjct: 361 DLKLLRPILCQGSNDEMLFKTTVRRVIYQMRHQMPLRQKIDFTEQRKGAEVEAVLNLMNC 420

Query: 421 GSECHSDEQVMSLGCDDYSCDNDFVLTEGYKNFGHQQHKIDEACSSSMANPVGLS 475
           GSECHSDEQVMSLGCDDYSCDNDFVLTEGYKNFGHQQHKIDEACSSSMANPVGLS
Sbjct: 421 GSECHSDEQVMSLGCDDYSCDNDFVLTEGYKNFGHQQHKIDEACSSSMANPVGLS 475



>Os09g0103200 Conserved hypothetical protein
          Length = 563

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/476 (77%), Positives = 379/476 (79%), Gaps = 64/476 (13%)

Query: 64  SETDFSFKDANKLCSLVXXXXXXXXXXXX-------------------------XXXESY 98
           SETDFSFKDANKLCSL+                                        ESY
Sbjct: 3   SETDFSFKDANKLCSLIRKQQALAKKKRKWLRSLIPREDGLIKPIKRPKFLKDVYLAESY 62

Query: 99  VRSDEVSCEKVIAHVEKCFDFQSDGYSHHIVQDGLQFFKLQKGKDGSLSPQGLADMQLII 158
           VRSDEVSCEKVIAHVEKC+ FQSDGYSHHIVQDGLQ FKLQKGKDGSLSPQGLADMQLII
Sbjct: 63  VRSDEVSCEKVIAHVEKCYGFQSDGYSHHIVQDGLQLFKLQKGKDGSLSPQGLADMQLII 122

Query: 159 NKLSNEALHSVANIVTHNRVSFEKTRPAMNKIIEDHLPQYLANLRDENDMSQLSHILTNS 218
           NKLSNEALHSVANI THNRVSFEKTRPAM KIIEDHLPQYLANL DENDMSQLSHILTN 
Sbjct: 123 NKLSNEALHSVANIATHNRVSFEKTRPAMKKIIEDHLPQYLANLHDENDMSQLSHILTNP 182

Query: 219 FSCRSNSLNIATPISPKMLSSINQALNVLGTLTIQSLVAMKRKLDEISFTPKFSFVPRIS 278
           FS RSNSLNI TPISPKMLSSI+QALNVL TLTIQ+LVAMKRKLDE+SFTPKFSFVPRIS
Sbjct: 183 FSYRSNSLNITTPISPKMLSSIDQALNVLSTLTIQALVAMKRKLDEVSFTPKFSFVPRIS 242

Query: 279 RKAHMVTVIRKQCNKMISRVGESGDLPKNLAKALSVVNLYRKQELKCMDISQAEFFPFSK 338
           RKAHMVTVIRK+CNKMISRVGESGDLPKNLAKALSVVNLYRKQELKCMDISQAEFFPFSK
Sbjct: 243 RKAHMVTVIRKECNKMISRVGESGDLPKNLAKALSVVNLYRKQELKCMDISQAEFFPFSK 302

Query: 339 KAIFLQNDVLNAIWSIQKLKKGDLKLLRPILCQGSNDEMLFKTTVRRVIYQ--------- 389
           KAIFLQNDVLNAIWSIQKLKKGDLKLLR ILCQGSNDEML KTTVRR +           
Sbjct: 303 KAIFLQNDVLNAIWSIQKLKKGDLKLLRAILCQGSNDEMLLKTTVRRYLIDCLFECDEGD 362

Query: 390 ----------MRHQMPLRQKIDFTEQRKGAEVEAVLN--------------------LMN 419
                     + +QMPLRQKIDFTEQRKGAE+EAVLN                    LMN
Sbjct: 363 LPDEALRAIALCNQMPLRQKIDFTEQRKGAELEAVLNVSSSLRALVYHCTGGQTDDQLMN 422

Query: 420 CGSECHSDEQVMSLGCDDYSCDNDFVLTEGYKNFGHQQHKIDEACSSSMANPVGLS 475
           C SECHSDEQVMSLGCDDYSCDNDFVLTEGYKNFGHQQHKIDEACSSSM NPV +S
Sbjct: 423 CESECHSDEQVMSLGCDDYSCDNDFVLTEGYKNFGHQQHKIDEACSSSMVNPVSVS 478



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,830,935
Number of extensions: 585487
Number of successful extensions: 1265
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 2
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)