BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0626900 Os01g0626900|AK071582
(245 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0626900 Helix-loop-helix DNA-binding domain containing... 419 e-118
Os02g0315600 Helix-loop-helix DNA-binding domain containing... 113 1e-25
>Os01g0626900 Helix-loop-helix DNA-binding domain containing protein
Length = 245
Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/245 (84%), Positives = 207/245 (84%)
Query: 1 MQRDPTAFTGNPSFAYGHEADGYIANGPLGGQCNYRVPVSPAFGAPSGMTSPQLRTSLGG 60
MQRDPTAFTGNPSFAYGHEADGYIANGPLGGQCNYRVPVSPAFGAPSGMTSPQLRTSLGG
Sbjct: 1 MQRDPTAFTGNPSFAYGHEADGYIANGPLGGQCNYRVPVSPAFGAPSGMTSPQLRTSLGG 60
Query: 61 FEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATNAFPSYPEPICRSSGQDNGN 120
FEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATNAFPSYPEPICRSSGQDNGN
Sbjct: 61 FEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATNAFPSYPEPICRSSGQDNGN 120
Query: 121 LEEVSSSFKEDTREIDALLXXXXXXXXXXVKSTGRTPDCFEXXXXXXXXXXXXXXXXXXX 180
LEEVSSSFKEDTREIDALL VKSTGRTPDCFE
Sbjct: 121 LEEVSSSFKEDTREIDALLSSDEESDEDDVKSTGRTPDCFESDSLDSSSPPRSRKMHHSS 180
Query: 181 XXXXXXXXXMDTVTHERMRNMVTVLRGIIPGGDQLDTASVIEEAVRYLKFLKMEAKKLGV 240
MDTVTHERMRNMVTVLRGIIPGGDQLDTASVIEEAVRYLKFLKMEAKKLGV
Sbjct: 181 SQSSVFHGSMDTVTHERMRNMVTVLRGIIPGGDQLDTASVIEEAVRYLKFLKMEAKKLGV 240
Query: 241 EVSDN 245
EVSDN
Sbjct: 241 EVSDN 245
>Os02g0315600 Helix-loop-helix DNA-binding domain containing protein
Length = 254
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 61 FEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSAT----------NAFPSYPEPI 110
EFQPS CP+N++IFDQT K R+M HP+L K ++ A +
Sbjct: 74 LEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGGGSSAYDNNVYGGGGAHDAAKGAY 133
Query: 111 CRSSGQDNGNLEEVSSSFKEDTREIDALLXXXXXXXXXXVKSTGRTPDCFEXXXXXXXXX 170
S G D+ + S KEDT EIDALL V STGRTP +
Sbjct: 134 RDSVGYDDD--DSCSVRQKEDTDEIDALLSSEDGDEDDVV-STGRTPGYRDGSSPDSTCS 190
Query: 171 XXXXXXXXXXXXXXXXXXXMDTVTHERMRNMVTVLRGIIPGGDQLDTASVIEEAVRYLKF 230
ERM+ MV L+GIIPGG+Q+DT +V++EAVRYLK
Sbjct: 191 SSYGGGQARPGR-----------KKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYLKS 239
Query: 231 LKMEAKKLGVEVSDN 245
LK+E KKLGV SDN
Sbjct: 240 LKVEVKKLGVRGSDN 254
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,763,225
Number of extensions: 320269
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 3
Length of query: 245
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 147
Effective length of database: 11,918,829
Effective search space: 1752067863
Effective search space used: 1752067863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)