Os02g0315600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os02g0315600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.1 | 0.562 | 6.16 | -0.276 | 0.429 | -1.11 | 1.13 | -5.09 | -0.144 | 8.19 | 47.1 | 103 | -- | -- |
| 157.63 | 0.589 | 6.19 | -0.27 | 0.429 | -0.18 | 0.765 | -- | -0.178 | 7.03 | 47.1 | 103 | -- | -- |
| 146.65 | 0.564 | 6.16 | -0.251 | 0.424 | -1.11 | -- | -4.74 | -0.143 | 7.82 | 47.22 | 109 | -- | -- |
| 157.2 | 0.584 | 6.2 | -0.233 | 0.376 | -0.303 | -- | -- | -0.221 | 8.13 | 5.142 | 228 | -- | -- |
| 156.54 | 0.583 | 6.17 | -0.232 | -- | -0.902 | -- | -4.53 | -0.142 | -- | 47.99 | 109 | -- | -- |
| 157.87 | 0.589 | 6.19 | -0.259 | 0.425 | -- | 0.782 | -- | -0.174 | 6.91 | -- | -- | -- | -- |
| 159.45 | 0.591 | 6.19 | -0.245 | 0.427 | -- | -- | -- | -0.176 | 6.9 | -- | -- | -- | -- |
| 156.93 | 0.583 | 6.19 | -0.199 | -- | -0.575 | -- | -- | -0.105 | -- | -22.38 | 833 | -- | -- |
| 157.91 | 0.585 | 6.18 | -- | 0.408 | -0.375 | -- | -- | -0.141 | 8.97 | 3.673 | 220 | -- | -- |
| 169.01 | 0.607 | 6.2 | -0.236 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 161.04 | 0.594 | 6.18 | -- | 0.424 | -- | -- | -- | -0.148 | 6.94 | -- | -- | -- | -- |
| 157.97 | 0.585 | 6.18 | -- | -- | -0.584 | -- | -- | -0.0822 | -- | -9.798 | 831 | -- | -- |
| 170.48 | 0.609 | 6.19 | -- | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 2 | 136.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 4 | 136.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 6 | 136.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 29 | 137.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 35 | 138.12 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 17 |
| 36 | 138.13 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 75 | 139.22 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 3 |
| 77 | 139.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 96 | 139.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 106 | 139.84 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 1 |
| 131 | 140.22 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 142 | 140.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 281 | 142.02 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 17 |
| 300 | 142.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 3 |
| 322 | 142.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 352 | 142.55 | humidity | 60 | 90 | > th | dose dependent | rect. | 17 | 3 |
| 428 | 143.11 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 4 |
| 433 | 143.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 449 | 143.27 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 3 |
| 665 | 144.21 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 687 | 144.31 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 10 |
| 696 | 144.35 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 2 |
| 704 | 144.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 718 | 144.43 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 724 | 144.46 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 19 |
| 753 | 144.56 | radiation | 40 | 90 | > th | dose dependent | rect. | 9 | 4 |
| 754 | 144.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 12 |
| 800 | 144.64 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 16 |
| 820 | 144.71 | radiation | 40 | 90 | > th | dose dependent | sin | 6 | NA |
| 834 | 144.76 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 16 |
| 875 | 144.89 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 879 | 144.90 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 16 |
| 886 | 144.92 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 6 |
| 937 | 145.07 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 16 |
| 954 | 145.11 | temperature | 30 | 10 | < th | dose independent | sin | 4 | NA |
| 985 | 145.21 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 5 |