BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0315600 Os02g0315600|AK107002
(254 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29950.1 | chr1:10493461-10494216 FORWARD LENGTH=252 88 4e-18
AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199 54 6e-08
AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374 54 1e-07
>AT1G29950.1 | chr1:10493461-10494216 FORWARD LENGTH=252
Length = 251
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 93/211 (44%), Gaps = 36/211 (17%)
Query: 70 PMNELEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGGGSSAYDNNVYXXXXXXXXX 129
P + +E QPSA CPKN+VIFDQT +S+VM+HP L HK S NN+
Sbjct: 39 PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHPELTHKLMNTPSL--NNL-ASTFQNEYV 95
Query: 130 XXXYRDSVGYDDDDSCSVRQKEDTDEIXXXXXX-------------XXXXXXXXXSTGRT 176
Y + Y+ + S S +ED +EI ST RT
Sbjct: 96 GGSYGNYGNYEQEVSSSY--QEDPNEIDALLSADEDYEENDDNEGEEDGGDSEEVSTART 153
Query: 177 PGYRDGXXXXXXXXXXYGGGQARPGRKKER------------------MKKMVRTLKGII 218
G YG +++ MKKM+ L+ I+
Sbjct: 154 SSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSASSSNNDGKGRKKMKKMMGVLRRIV 213
Query: 219 PGGNQMDTPAVLDEAVRYLKSLKVEVKKLGV 249
PGG QM+T VLDEAV+YLKSLK+E +KLGV
Sbjct: 214 PGGEQMNTACVLDEAVQYLKSLKIEAQKLGV 244
>AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199
Length = 198
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 202 RKKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKL 247
R++ER+ + +R LK I+PGG +MDT ++LDEA+RY K LK +V+ L
Sbjct: 129 RRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRIL 174
>AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374
Length = 373
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 202 RKKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKL 247
+++ER+ + +R L+ ++PGG +MDT ++LDEA YLK L+ +VK L
Sbjct: 286 QRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKAL 331
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,501,168
Number of extensions: 147070
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 6
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)