Os01g0626900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os01g0626900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.62 | 0.233 | 11.9 | 0.102 | 0.251 | -0.483 | 0.13 | 0.747 | 0.0705 | 4.47 | 0.5625 | 1252 | -- | -- |
| 24.58 | 0.231 | 11.9 | 0.0474 | 0.375 | -0.758 | 0.394 | -- | 0.081 | 6.52 | 0.1959 | 1164 | -- | -- |
| 24.32 | 0.23 | 11.9 | 0.11 | 0.293 | -0.533 | -- | 0.588 | 0.0737 | 5.5 | 0.2128 | 1156 | -- | -- |
| 24.76 | 0.232 | 11.9 | 0.105 | 0.376 | -0.808 | -- | -- | 0.0635 | 6.57 | 0.24 | 1168 | -- | -- |
| 27.88 | 0.246 | 11.9 | 0.104 | -- | -0.508 | -- | 0.655 | 0.0676 | -- | 0.6381 | 1307 | -- | -- |
| 27.64 | 0.246 | 11.9 | 0.27 | 0.286 | -- | -0.106 | -- | 0.133 | 1.85 | -- | -- | -- | -- |
| 27.68 | 0.246 | 11.9 | 0.274 | 0.286 | -- | -- | -- | 0.134 | 1.92 | -- | -- | -- | -- |
| 28.01 | 0.246 | 11.9 | 0.153 | -- | -0.605 | -- | -- | 0.0856 | -- | 0.2499 | 1329 | -- | -- |
| 25.16 | 0.234 | 11.9 | -- | 0.412 | -0.847 | -- | -- | 0.0609 | 6.58 | 0.2272 | 1165 | -- | -- |
| 32.62 | 0.267 | 11.9 | 0.285 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 29.66 | 0.255 | 11.9 | -- | 0.291 | -- | -- | -- | 0.103 | 1.95 | -- | -- | -- | -- |
| 28.42 | 0.248 | 11.9 | -- | -- | -0.682 | -- | -- | 0.0622 | -- | 0.2306 | 1340 | -- | -- |
| 34.77 | 0.275 | 11.9 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.74 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 2 | 24.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 5 | 24.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 6 | 24.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 7 | 24.88 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 8 | 24.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 12 | 24.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 21 | 24.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 28 | 24.94 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 49 | 24.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 53 | 24.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 55 | 24.98 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 75 | 25.00 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 122 | 25.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 138 | 25.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 143 | 25.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 244 | 25.05 | temperature | 25.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 256 | 25.06 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 260 | 25.06 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 277 | 25.07 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 281 | 25.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 301 | 25.09 | temperature | 10.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 317 | 25.10 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 332 | 25.11 | radiation | 1.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 346 | 25.12 | radiation | 1.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 388 | 25.14 | temperature | 25.0 | 720 | > th | dose independent | sin | 5 | NA |
| 416 | 25.15 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 431 | 25.16 | temperature | 25.0 | 720 | < th | dose independent | sin | 3 | NA |
| 442 | 25.16 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 467 | 25.18 | temperature | 25.0 | 720 | > th | dose independent | rect. | 1 | 14 |
| 473 | 25.18 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 486 | 25.19 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 521 | 25.20 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 11 |
| 579 | 25.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 616 | 25.23 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 622 | 25.23 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 689 | 25.25 | radiation | 1.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 713 | 25.26 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 11 |
| 717 | 25.26 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 13 |
| 740 | 25.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 771 | 25.26 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 781 | 25.27 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 782 | 25.27 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 783 | 25.27 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 806 | 25.27 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 869 | 25.28 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 948 | 25.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 987 | 25.29 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 1 |