BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0625200 Os01g0625200|AK060383
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0625200 Kinesin, motor region domain containing protein 501 e-142
Os05g0154700 Similar to Kinesin heavy chain (Fragment) 108 5e-24
>Os01g0625200 Kinesin, motor region domain containing protein
Length = 258
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/258 (93%), Positives = 242/258 (93%)
Query: 1 MISCISPSSGSCEHTLNTLRYADRVKSLSKGSNTKKDLSLAAAPLREXXXXXXXXXXXXX 60
MISCISPSSGSCEHTLNTLRYADRVKSLSKGSNTKKDLSLAAAPLRE
Sbjct: 1 MISCISPSSGSCEHTLNTLRYADRVKSLSKGSNTKKDLSLAAAPLRESSPSLLASAVPSF 60
Query: 61 XXXEVMNDITERSNFGWTKQQYVKEHQAPTFVDRMQKVKEDTEFSLSNGGYFKEQRTKGS 120
EVMNDITERSNFGWTKQQYVKEHQAPTFVDRMQKVKEDTEFSLSNGGYFKEQRTKGS
Sbjct: 61 SSAEVMNDITERSNFGWTKQQYVKEHQAPTFVDRMQKVKEDTEFSLSNGGYFKEQRTKGS 120
Query: 121 VPVGIAEVPDTVYQQGRQPTRKARDLTSDNNMRNSIAYPIIRRVVPDEDEHLNELLQEEE 180
VPVGIAEVPDTVYQQGRQPTRKARDLTSDNNMRNSIAYPIIRRVVPDEDEHLNELLQEEE
Sbjct: 121 VPVGIAEVPDTVYQQGRQPTRKARDLTSDNNMRNSIAYPIIRRVVPDEDEHLNELLQEEE 180
Query: 181 DLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGILSQKAAGIVDLQARLA 240
DLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGILSQKAAGIVDLQARLA
Sbjct: 181 DLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGILSQKAAGIVDLQARLA 240
Query: 241 QFQRRLNENNVLLYAQCP 258
QFQRRLNENNVLLYAQCP
Sbjct: 241 QFQRRLNENNVLLYAQCP 258
>Os05g0154700 Similar to Kinesin heavy chain (Fragment)
Length = 466
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 71/85 (83%)
Query: 168 EDEHLNELLQEEEDLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGILSQ 227
+D ++ +L+EEE L++AHRK++E T+++++EEMNLL E DQPG+ +D+Y+T+LS +LS+
Sbjct: 375 DDVEIDAILEEEEALIAAHRKEIENTMEIVREEMNLLAEVDQPGSLIDNYVTQLSFLLSR 434
Query: 228 KAAGIVDLQARLAQFQRRLNENNVL 252
KAAG+V LQARLA+FQ RL E +L
Sbjct: 435 KAAGLVSLQARLARFQHRLKEQEIL 459
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 37/37 (100%)
Query: 1 MISCISPSSGSCEHTLNTLRYADRVKSLSKGSNTKKD 37
MISCISP++GSCEHTLNTLRYADRVKSLSKGSNT+K+
Sbjct: 155 MISCISPNAGSCEHTLNTLRYADRVKSLSKGSNTRKE 191
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,744,981
Number of extensions: 299288
Number of successful extensions: 879
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 3
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)