BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0620100 Os01g0620100|AK070122
         (324 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0620100  WD40-like domain containing protein                 643   0.0  
Os02g0135800  Similar to Sec13-like protein (Fragment)             71   8e-13

>Os01g0620100 WD40-like domain containing protein
          Length = 324

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/324 (97%), Positives = 315/324 (97%)

Query: 1   MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDXXXXXXXXXKWQAHKHAILNIV 60
           MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYD         KWQAHKHAILNIV
Sbjct: 1   MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDSQSQPSPSSKWQAHKHAILNIV 60

Query: 61  WLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLK 120
           WLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLK
Sbjct: 61  WLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLK 120

Query: 121 MVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQ 180
           MVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQ
Sbjct: 121 MVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQ 180

Query: 181 QASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYE 240
           QASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYE
Sbjct: 181 QASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYE 240

Query: 241 IIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGM 300
           IIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGM
Sbjct: 241 IIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGM 300

Query: 301 VKLWQANLNGVWHEQAVLDCNVSH 324
           VKLWQANLNGVWHEQAVLDCNVSH
Sbjct: 301 VKLWQANLNGVWHEQAVLDCNVSH 324



>Os02g0135800 Similar to Sec13-like protein (Fragment)
          Length = 305

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 122/305 (40%), Gaps = 22/305 (7%)

Query: 19  NHCGRRLAAGAVDGFVSVYDXX-XXXXXXXKWQAHKHAILNIVWLPPDYGDAIACVCADG 77
           ++ G+R+A  + D  + +                H+  +  + W  P YG  +A    DG
Sbjct: 20  DYYGKRIATASSDNTIKIIGVSGNSHQQLATLSGHQGPVWQVAWAHPKYGSLLASCSYDG 79

Query: 78  TLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLKMVTAYSDGQVKVYELLD 137
            + +W+E S+ D+   W +   F    S +  + +      L +    SDG + V+    
Sbjct: 80  RVIIWKEGSKPDE---WAQAHTFIEHKSSVNSIAWAPHELGLCLACGSSDGNISVFTARS 136

Query: 138 SLELDKWQL-QAEFQNITDPVSRSGKPACTSASIAWSPRRGESQQASFAIGFNSDSPNFN 196
               D  ++ QA    +T   S S  PA    ++      G S Q  +     S   + N
Sbjct: 137 DGGWDTTRIDQAHPVGVT---SVSWAPAMAPGALI---NTGPSGQFEYVQKLASGGCD-N 189

Query: 197 SCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYEIIAVATCKG-IAIWHI 255
           + K+W+      R      L   Q   D V  VAWAPN+G P   IA A+  G + IW  
Sbjct: 190 TVKVWKLYNGSWRMDCFPAL---QMHRDWVRDVAWAPNLGLPKSTIASASQDGTVVIW-- 244

Query: 256 GLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGMVKLWQANLNGVWHEQ 315
             +A  +G        VL      V +L W + G  LA + G+  V LW+  ++G W + 
Sbjct: 245 --TAPKEGEQWEGR--VLYDFQTPVWRLSWSLTGNILAVSDGNDNVTLWKEAVDGEWQQV 300

Query: 316 AVLDC 320
             ++ 
Sbjct: 301 TTVEA 305



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,538,919
Number of extensions: 530467
Number of successful extensions: 1483
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 223
Effective length of database: 11,762,187
Effective search space: 2622967701
Effective search space used: 2622967701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)