Os01g0620100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0620100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.2 | 0.346 | 7.56 | 0.309 | 0.609 | 2.19 | -0.404 | -0.143 | -0.108 | 0.03 | 19.19 | 106 | -- | -- |
| 54.08 | 0.343 | 7.56 | 0.338 | 0.569 | 2.18 | -0.348 | -- | -0.0923 | 24 | 18.9 | 122 | -- | -- |
| 54.63 | 0.344 | 7.55 | 0.397 | 0.578 | 2.18 | -- | 0.392 | -0.0759 | 0.213 | 18.86 | 136 | -- | -- |
| 54.63 | 0.344 | 7.55 | 0.34 | 0.539 | 2.2 | -- | -- | -0.0943 | 0.344 | 18.86 | 155 | -- | -- |
| 60.85 | 0.363 | 7.54 | 0.408 | -- | 2.03 | -- | 0.295 | -0.0634 | -- | 17.65 | 374 | -- | -- |
| 126.32 | 0.527 | 7.48 | 0.854 | 0.616 | -- | 0.611 | -- | 0.271 | 18.3 | -- | -- | -- | -- |
| 127.12 | 0.528 | 7.48 | 0.846 | 0.619 | -- | -- | -- | 0.272 | 18.6 | -- | -- | -- | -- |
| 60.71 | 0.363 | 7.54 | 0.357 | -- | 2.04 | -- | -- | -0.0693 | -- | 17.7 | 395 | -- | -- |
| 57.23 | 0.352 | 7.57 | -- | 0.575 | 2.39 | -- | -- | -0.152 | 0.53 | 18.13 | 159 | -- | -- |
| 147.11 | 0.567 | 7.47 | 0.831 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 145.97 | 0.565 | 7.5 | -- | 0.609 | -- | -- | -- | 0.178 | 18.7 | -- | -- | -- | -- |
| 63.72 | 0.372 | 7.55 | -- | -- | 2.25 | -- | -- | -0.123 | -- | 16.65 | 397 | -- | -- |
| 165.31 | 0.6 | 7.49 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 53.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 7 | 54.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 8 | 54.98 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 18 | 55.76 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 27 | 56.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 31 | 56.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 33 | 56.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 40 | 56.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 149 | 60.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 171 | 61.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 292 | 63.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 541 | 65.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 543 | 65.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 551 | 65.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 569 | 65.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 574 | 65.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 591 | 65.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 626 | 65.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 628 | 65.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 669 | 65.60 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 865 | 66.01 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 933 | 66.16 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 976 | 66.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 19 |