BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0620100 Os01g0620100|AK070122
(324 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64350.1 | chr1:23881582-23883073 FORWARD LENGTH=327 387 e-108
AT3G01340.1 | chr3:127557-128465 REVERSE LENGTH=303 66 3e-11
AT2G30050.1 | chr2:12825540-12826448 FORWARD LENGTH=303 64 7e-11
>AT1G64350.1 | chr1:23881582-23883073 FORWARD LENGTH=327
Length = 326
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/320 (56%), Positives = 236/320 (73%), Gaps = 4/320 (1%)
Query: 4 RQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDXXXXXXXXX----KWQAHKHAILNI 59
+ +A L +G C WN G RLAAG+++G +S+Y+ K + + +I+ I
Sbjct: 3 KSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSKVRVSESSIVKI 62
Query: 60 VWLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSL 119
VWLP +YGDA+ACVC DG+LS+WEE+SED W+ CK ++ +S +L VQFG+ SL
Sbjct: 63 VWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVSRKSL 122
Query: 120 KMVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGES 179
KMV AYSDG ++V+ELL+ LEL WQLQAEFQN+ D +S GKP+ SAS++W+P +GE
Sbjct: 123 KMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPMKGEE 182
Query: 180 QQASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPY 239
Q+ SF + FNSDSP+ NS KIWEF+EAH RWL + EL P+DKGD V+A++WAPNIGRPY
Sbjct: 183 QEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIGRPY 242
Query: 240 EIIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDG 299
E++AVAT KGI IWH+GL+ + +G L + V+ LSGH GEV Q+EWDM GMTLASTG DG
Sbjct: 243 EVVAVATHKGIGIWHVGLAPDLEGRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDG 302
Query: 300 MVKLWQANLNGVWHEQAVLD 319
MVKLWQ+NLNG WHEQA L+
Sbjct: 303 MVKLWQSNLNGEWHEQATLE 322
>AT3G01340.1 | chr3:127557-128465 REVERSE LENGTH=303
Length = 302
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 125/318 (39%), Gaps = 53/318 (16%)
Query: 19 NHCGRRLAAGAVDGFVSV--YDXXXXXXXXXKWQAHKHAILNIVWLPPDYGDAIACVCAD 76
++ G+R+A + D + + H+ + + W P +G +A D
Sbjct: 20 DYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVWQVAWAHPKFGSLLASCSYD 79
Query: 77 GTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLKMVTAYSDGQVKVYELL 136
G + LW+E +++ W + VF + + + L + SDG + V+
Sbjct: 80 GQIILWKEGNQNQ----WTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSAR 135
Query: 137 -----DSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQQASFAIGFNSD 191
D+ ++D QA +T S++W+P + + +
Sbjct: 136 ADGGWDTTKID----QAHPVGVT--------------SVSWAP----ATEPGALVSSGMI 173
Query: 192 SPNF--------NSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYEIIA 243
P + ++ K+W+F + L D V VAWAPN+G P IA
Sbjct: 174 DPVYKLASGGCDSTVKVWKFSNGSWKMDCFPAL---NKHTDWVRDVAWAPNLGLPKSTIA 230
Query: 244 VATCKG-IAIWHIGLSAES-DGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGMV 301
+ G + IW IG E +G+ VL V ++ W + G LA + G+ V
Sbjct: 231 SGSEDGKVIIWTIGKEGEQWEGT-------VLKDFKTPVWRVSWSLTGNLLAVSDGNNNV 283
Query: 302 KLWQANLNGVWHEQAVLD 319
+W+ +++G W + V++
Sbjct: 284 TVWKESVDGEWEQVTVVE 301
>AT2G30050.1 | chr2:12825540-12826448 FORWARD LENGTH=303
Length = 302
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 45/314 (14%)
Query: 19 NHCGRRLAAGAVDGFVSV--YDXXXXXXXXXKWQAHKHAILNIVWLPPDYGDAIACVCAD 76
++ G+R+A + D + + H+ + + W P YG +A D
Sbjct: 20 DYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVWEVAWAHPKYGSILASCSYD 79
Query: 77 GTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLKMVTAYSDGQVKVYELL 136
G + LW+E +++ W + VF S + + + L + SDG + V+
Sbjct: 80 GQVILWKEGNQNQ----WTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTAR 135
Query: 137 DSLELDKWQL-QAEFQNITDPVSRSGKPACTSASIAWSPRRGESQQASFAIGFNSDSPNF 195
D ++ QA +T S++W+P S + P +
Sbjct: 136 ADGGWDTSRIDQAHPVGVT--------------SVSWAPATAPGALVSSGL----LDPVY 177
Query: 196 --------NSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYEIIAVATC 247
N+ K+W+ + L Q D V VAWAPN+G P IA +
Sbjct: 178 KLASGGCDNTVKVWKLANGSWKMDCFPAL---QKHTDWVRDVAWAPNLGLPKSTIASGSQ 234
Query: 248 KG-IAIWHIGLSAES-DGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGMVKLWQ 305
G + IW +G E +G VL V ++ W + G LA + G+ V +W+
Sbjct: 235 DGKVIIWTVGKEGEQWEGK-------VLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWK 287
Query: 306 ANLNGVWHEQAVLD 319
++G W + ++
Sbjct: 288 EAVDGEWEQVTAVE 301
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,637,910
Number of extensions: 318359
Number of successful extensions: 1079
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)