Os02g0135800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sec13-like protein (Fragment).
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Os02g0135800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sec13-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.31 | 0.184 | 12 | 0.711 | 0.43 | -0.543 | 0.0541 | 1.16 | 0.188 | 7.86 | 21.08 | 269 | -- | -- |
| 16.23 | 0.188 | 12 | 0.534 | 0.451 | -0.505 | -0.223 | -- | 0.151 | 7.27 | 17.92 | 358 | -- | -- |
| 15.32 | 0.182 | 12 | 0.708 | 0.431 | -0.541 | -- | 1.14 | 0.187 | 7.84 | 21.07 | 267 | -- | -- |
| 16.2 | 0.187 | 12 | 0.527 | 0.439 | -0.486 | -- | -- | 0.138 | 7.43 | 17.91 | 339 | -- | -- |
| 21.8 | 0.217 | 12 | 0.877 | -- | -0.855 | -- | 1.76 | 0.26 | -- | 22.36 | 433 | -- | -- |
| 19.75 | 0.208 | 12 | 0.389 | 0.587 | -- | -0.114 | -- | 0.0453 | 6.87 | -- | -- | -- | -- |
| 19.78 | 0.208 | 12 | 0.387 | 0.587 | -- | -- | -- | 0.0457 | 6.9 | -- | -- | -- | -- |
| 23.56 | 0.226 | 12 | 0.557 | -- | -0.726 | -- | -- | 0.174 | -- | 21.61 | 465 | -- | -- |
| 22.15 | 0.219 | 12 | -- | 0.489 | -0.307 | -- | -- | 0.0376 | 7.14 | 20.5 | 330 | -- | -- |
| 37.83 | 0.287 | 12 | 0.4 | -- | -- | -- | -- | 0.0568 | -- | -- | -- | -- | -- |
| 23.73 | 0.228 | 12 | -- | 0.591 | -- | -- | -- | 0.00256 | 6.86 | -- | -- | -- | -- |
| 30.65 | 0.258 | 12 | -- | -- | -0.618 | -- | -- | 0.0627 | -- | 24.2 | 422 | -- | -- |
| 42.05 | 0.303 | 12.1 | -- | -- | -- | -- | -- | 0.0124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 48 | 14.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 92 | 15.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 98 | 15.29 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 131 | 15.38 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 132 | 15.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 141 | 15.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 143 | 15.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 149 | 15.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 179 | 15.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 259 | 15.69 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 272 | 15.71 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 274 | 15.72 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 302 | 15.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 347 | 15.84 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 19 |
| 366 | 15.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 385 | 15.88 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 386 | 15.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 512 | 15.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 575 | 16.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 589 | 16.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 627 | 16.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 657 | 16.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 660 | 16.06 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 665 | 16.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 757 | 16.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 762 | 16.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 796 | 16.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 802 | 16.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 899 | 16.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 923 | 16.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 925 | 16.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 926 | 16.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 937 | 16.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 976 | 16.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 980 | 16.20 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 11 |
| 990 | 16.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |