BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0610500 Os01g0610500|AK073115
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0610500  Yip1 domain containing protein                      500   e-142
Os05g0455800  Yip1 domain containing protein                      164   9e-41

>Os01g0610500 Yip1 domain containing protein
          Length = 292

 Score =  500 bits (1287), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/292 (86%), Positives = 254/292 (86%)

Query: 1   MMSGGGYSALDDPKASGSVPAATGPDPPTIKFADSNLQIFPPSEAKGKISGAYRPPTDAD 60
           MMSGGGYSALDDPKASGSVPAATGPDPPTIKFADSNLQIFPPSEAKGKISGAYRPPTDAD
Sbjct: 1   MMSGGGYSALDDPKASGSVPAATGPDPPTIKFADSNLQIFPPSEAKGKISGAYRPPTDAD 60

Query: 61  DTFXXXXXXXXXXXXXXXXXXXXXXXXXXWFRMFSVAAYKPYFDVDTSDVVERIWESVFP 120
           DTF                          WFRMFSVAAYKPYFDVDTSDVVERIWESVFP
Sbjct: 61  DTFSSSKSGGGGRGGGGGGAGSDDAGQGGWFRMFSVAAYKPYFDVDTSDVVERIWESVFP 120

Query: 121 FRGTFTEKTSENPDLYGPFWTCTTLIFVAASIATFVTYLSHKWHKKEWNYDINLVTWSAG 180
           FRGTFTEKTSENPDLYGPFWTCTTLIFVAASIATFVTYLSHKWHKKEWNYDINLVTWSAG
Sbjct: 121 FRGTFTEKTSENPDLYGPFWTCTTLIFVAASIATFVTYLSHKWHKKEWNYDINLVTWSAG 180

Query: 181 LFYGYVTFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAG 240
           LFYGYVTFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAG
Sbjct: 181 LFYGYVTFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAG 240

Query: 241 VAGFMSATFVAMNLRAHIVNSGERWFLIVAGIFXXXXXXXXXXXXYFFTITV 292
           VAGFMSATFVAMNLRAHIVNSGERWFLIVAGIF            YFFTITV
Sbjct: 241 VAGFMSATFVAMNLRAHIVNSGERWFLIVAGIFLLQLGLAVLLKLYFFTITV 292



>Os05g0455800 Yip1 domain containing protein
          Length = 273

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 137/260 (52%), Gaps = 32/260 (12%)

Query: 6   GYSALDDPKASGSVPAATGPDP----PTIKFADSNLQIFPPS----EAKGKISGAYRPP- 56
           GY+ L      GSVPAA  P+     P  +   S LQ FPP+       G   G Y+PP 
Sbjct: 4   GYANLPTSHLLGSVPAALTPEERKPSPVAEVGTSRLQQFPPALGGTGGVGGGGGGYQPPG 63

Query: 57  TDADDTFXXXXXXXXXXXXXXXXXXXXXXXXXXWFRMFSVAAYKPYFDVDTSDVVERIWE 116
           T AD                             W   F+VA+Y PYF+VDT  VV+R+  
Sbjct: 64  TPADGD---------------------VETQTNWKGYFNVASYAPYFNVDTDVVVDRLIS 102

Query: 117 SVFPFRGTFTEKTSENPDLYGPFWTCTTLIFVAASIATFVTYL-SHKWHKKEWNYDINLV 175
           SV+P  G F  K   NPD+YGP W  TTLIF+ A+   F TYL   K     W++D+   
Sbjct: 103 SVYPMDGFF-RKIDANPDMYGPLWITTTLIFMLAAFGNFATYLMQRKTDLNIWSFDVGYF 161

Query: 176 TWSAGLFYGYVTFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFR 235
            W+A + YGY   VP   + + +YF +   LV+ WC++GYSLFIFIPAS+L ++P+E  R
Sbjct: 162 NWAASVMYGYAAAVPAIFFFLFQYFGSRPSLVRFWCMWGYSLFIFIPASVLLLIPVEFLR 221

Query: 236 WVIAGVAGFMSATFVAMNLR 255
           WVI  + G  S+ F+++NL+
Sbjct: 222 WVIIILVGGASSWFISLNLK 241



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,833,048
Number of extensions: 401177
Number of successful extensions: 1353
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)