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Os01g0610500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Yip1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0135) R2 : 0.00607
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0473 (0.0284) R2dN8 : 0.00784 R2N8 : 0.00607
σ : 0.254
deviance : 29.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.27 0.231 11 0.293 0.0509 0.431 0.366 -0.745 0.118 15 93.61 225 -- --
24.62 0.231 11 0.288 0.0654 0.455 0.512 -- 0.119 15.7 93.74 220 -- --
24.58 0.231 11 0.304 0.064 0.458 -- -0.98 0.125 17.2 93.74 219 -- --
25.38 0.235 11 0.303 0.0681 0.476 -- -- 0.115 17.3 93.96 226 -- --
24.73 0.232 11 0.309 -- 0.415 -- -1.04 0.112 -- 93.91 219 -- --
26.3 0.24 11 0.305 0.0196 -- -0.432 -- 0.0794 2.91 -- -- -- --
26.91 0.243 11 0.315 0.0249 -- -- -- 0.0818 5.47 -- -- -- --
25.5 0.235 11 0.3 -- 0.521 -- -- 0.104 -- 94.52 238 -- --
27.73 0.245 11 -- 0.0683 0.498 -- -- 0.11 17.5 93.66 248 -- --
26.95 0.243 11 0.316 -- -- -- -- 0.0824 -- -- -- -- --
29.53 0.254 11 -- 0.0303 -- -- -- 0.0467 5.04 -- -- -- --
27.92 0.246 11 -- -- 0.42 -- -- 0.0793 -- 93.8 253 -- --
29.58 0.254 11 -- -- -- -- -- 0.0473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.86 wind 7.0 720 < th dose independent rect. 15 12
6 24.17 radiation 1.0 1440 > th dose independent rect. 11 2
12 24.27 wind 7.0 720 < th dose independent rect. 15 18
15 24.32 radiation 1.0 1440 < th dose independent rect. 11 1
16 24.32 radiation 1.0 1440 < th dose dependent rect. 11 1
17 24.34 wind 7.0 720 < th dose independent rect. 15 20
25 24.45 precipitation 0.1 270 > th dose independent rect. 2 2
28 24.45 precipitation 0.1 270 > th dose dependent rect. 2 2
32 24.49 wind 3.0 720 > th dose dependent rect. 21 1
34 24.51 wind 7.0 720 < th dose independent rect. 15 3
35 24.51 wind 5.0 90 < th dose independent rect. 6 22
36 24.52 wind 5.0 720 > th dose independent rect. 21 1
42 24.54 wind 7.0 720 < th dose independent rect. 23 19
46 24.57 wind 1.0 90 < th dose dependent rect. 24 1
49 24.59 wind 1.0 1440 < th dose independent rect. 6 1
58 24.61 wind 1.0 90 < th dose independent rect. 24 1
59 24.61 radiation 1.0 1440 < th dose independent rect. 13 1
63 24.61 radiation 1.0 1440 < th dose dependent rect. 13 1
64 24.62 radiation 1.0 1440 < th dose independent rect. 11 3
67 24.62 humidity 90.0 720 > th dose dependent rect. 20 1
68 24.62 radiation 1.0 1440 < th dose dependent rect. 11 3
76 24.64 wind 5.0 270 < th dose independent rect. 7 11
81 24.64 wind 9.0 720 < th dose dependent rect. 15 3
88 24.66 wind 5.0 1440 > th dose dependent rect. 14 2
89 24.67 wind 1.0 1440 > th dose independent rect. 6 1
97 24.67 humidity 90.0 270 > th dose dependent rect. 18 12
100 24.68 humidity 90.0 270 > th dose dependent rect. 20 10
106 24.69 precipitation 0.1 720 < th dose independent rect. 15 12
111 24.69 precipitation 0.1 720 < th dose dependent rect. 15 12
123 24.71 wind 5.0 90 < th dose independent rect. 9 10
130 24.72 precipitation 0.1 270 > th dose independent rect. 17 12
137 24.72 humidity 90.0 270 > th dose dependent rect. 11 19
138 24.73 wind 5.0 90 < th dose independent rect. 16 12
157 24.75 humidity 50.0 720 > th dose independent rect. 11 19
159 24.75 humidity 80.0 4320 > th dose dependent rect. 8 1
167 24.76 wind 7.0 1440 > th dose independent rect. 14 2
178 24.77 atmosphere 1005.0 270 > th dose independent rect. 23 2
182 24.77 wind 1.0 1440 < th dose dependent rect. 6 1
192 24.79 atmosphere 1005.0 90 > th dose independent rect. 23 5
195 24.79 wind 5.0 90 > th dose independent rect. 12 18
199 24.79 humidity 90.0 270 > th dose dependent sin 12 NA
203 24.80 wind 7.0 720 < th dose independent rect. 17 14
211 24.80 wind 7.0 90 < th dose dependent rect. 8 20
212 24.80 wind 9.0 270 < th dose dependent rect. 6 21
233 24.82 wind 9.0 720 < th dose dependent rect. 14 13
246 24.83 wind 1.0 720 > th dose dependent rect. 19 4
260 24.84 precipitation 0.1 270 > th dose dependent rect. 17 13
274 24.86 precipitation 0.1 720 < th dose independent rect. 16 10
278 24.86 precipitation 0.1 720 < th dose independent rect. 23 19
280 24.86 humidity 90.0 30 > th dose dependent rect. 24 7
282 24.86 wind 9.0 720 < th dose dependent rect. 15 10
283 24.86 precipitation 0.1 720 < th dose dependent rect. 16 10
286 24.86 precipitation 0.1 720 < th dose dependent rect. 23 19
305 24.88 wind 7.0 720 < th dose independent sin 15 NA
324 24.88 humidity 90.0 30 > th dose dependent rect. 24 18
327 24.88 humidity 90.0 30 > th dose dependent rect. 24 22
364 24.90 temperature 15.0 720 > th dose independent rect. 18 5
386 24.91 radiation 1.0 4320 < th dose independent rect. 24 5
403 24.92 precipitation 0.1 30 > th dose independent sin 0 NA
405 24.92 wind 7.0 1440 < th dose independent rect. 23 1
408 24.92 wind 7.0 720 < th dose independent rect. 17 6
421 24.92 wind 9.0 270 < th dose dependent rect. 7 11
430 24.93 wind 7.0 1440 > th dose independent rect. 14 7
440 24.93 precipitation 0.1 30 > th dose dependent sin 0 NA
450 24.94 radiation 1.0 1440 > th dose independent rect. 9 1
453 24.94 humidity 90.0 10 > th dose independent rect. 5 2
463 24.94 humidity 90.0 30 > th dose dependent sin 5 NA
510 24.95 wind 5.0 1440 > th dose dependent rect. 14 8
514 24.95 humidity 50.0 270 > th dose dependent rect. 18 12
524 24.96 precipitation 0.1 30 < th dose independent sin 0 NA
525 24.96 radiation 1.0 30 < th dose independent rect. 5 1
537 24.96 humidity 50.0 720 > th dose independent rect. 1 22
539 24.96 precipitation 0.1 270 > th dose dependent sin 11 NA
540 24.96 precipitation 0.1 30 < th dose dependent sin 0 NA
541 24.96 wind 1.0 1440 < th dose dependent rect. 4 1
563 24.97 precipitation 0.1 270 > th dose independent sin 12 NA
564 24.97 precipitation 0.1 270 < th dose independent sin 12 NA
565 24.97 wind 5.0 1440 < th dose independent rect. 21 1
568 24.97 wind 5.0 720 > th dose independent rect. 18 5
578 24.97 precipitation 0.1 270 < th dose dependent sin 12 NA
587 24.97 radiation 20.0 4320 < th dose dependent rect. 24 5
605 24.98 radiation 20.0 4320 < th dose independent rect. 10 2
607 24.98 wind 7.0 720 < th dose independent rect. 6 5
618 24.98 wind 7.0 720 > th dose independent rect. 14 19
619 24.98 temperature 15.0 720 > th dose independent rect. 11 19
622 24.98 radiation 1.0 90 < th dose dependent rect. 5 1
635 24.98 wind 3.0 90 > th dose dependent rect. 12 21
651 24.99 wind 7.0 720 > th dose independent rect. 14 14
683 25.00 wind 7.0 720 > th dose independent sin 13 NA
685 25.00 wind 1.0 1440 < th dose independent rect. 4 1
704 25.00 radiation 40.0 720 < th dose independent rect. 14 14
712 25.00 humidity 90.0 10 > th dose dependent rect. 5 2
722 25.00 wind 3.0 90 > th dose dependent rect. 12 19
732 25.01 radiation 20.0 4320 > th dose independent rect. 10 2
736 25.01 temperature 15.0 720 > th dose independent rect. 16 9
743 25.01 radiation 30.0 720 < th dose independent rect. 15 12
765 25.01 humidity 90.0 270 > th dose dependent no NA NA
786 25.01 humidity 90.0 270 > th dose dependent rect. 20 23
814 25.02 radiation 10.0 4320 < th dose dependent rect. 23 1
834 25.02 radiation 1.0 720 < th dose dependent rect. 4 19
841 25.02 wind 3.0 90 > th dose dependent rect. 12 23
842 25.02 humidity 90.0 90 > th dose dependent rect. 3 23
848 25.03 temperature 25.0 10 < th dose independent rect. 5 3
870 25.03 precipitation 0.1 30 > th dose independent rect. 3 15
901 25.03 precipitation 0.1 30 > th dose dependent rect. 3 15
925 25.04 humidity 70.0 43200 < th dose independent rect. 7 3
929 25.04 radiation 10.0 720 < th dose independent rect. 18 5
956 25.04 radiation 10.0 720 < th dose dependent rect. 18 5
984 25.05 humidity 50.0 720 > th dose independent rect. 18 5
985 25.05 atmosphere 995.0 720 > th dose independent rect. 18 5
994 25.05 atmosphere 1005.0 10 > th dose independent rect. 18 11
996 25.05 humidity 50.0 720 > th dose independent rect. 3 12