Os05g0455800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Yip1 domain containing protein.
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Os05g0455800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Yip1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.48 | 0.159 | 10.8 | -0.0278 | 0.181 | 0.24 | -0.64 | 0.14 | 0.14 | 2.37 | 41.66 | 905 | -- | -- |
| 11.5 | 0.158 | 10.8 | -0.0139 | 0.173 | 0.246 | -0.637 | -- | 0.149 | 2.16 | 41.19 | 883 | -- | -- |
| 12.89 | 0.167 | 10.8 | -0.0078 | 0.205 | 0.218 | -- | 0.182 | 0.14 | 2.97 | 41.18 | 969 | -- | -- |
| 12.93 | 0.167 | 10.8 | -0.000532 | 0.195 | 0.207 | -- | -- | 0.147 | 3.03 | 41.19 | 938 | -- | -- |
| 13.9 | 0.174 | 10.8 | 0.00609 | -- | 0.335 | -- | -0.391 | 0.145 | -- | 43.01 | 504 | -- | -- |
| 13.55 | 0.173 | 10.8 | -0.0353 | 0.254 | -- | -0.54 | -- | 0.0986 | 3.83 | -- | -- | -- | -- |
| 14.24 | 0.177 | 10.8 | -0.0273 | 0.261 | -- | -- | -- | 0.101 | 4.64 | -- | -- | -- | -- |
| 14.1 | 0.175 | 10.8 | 0.00403 | -- | 0.339 | -- | -- | 0.144 | -- | 43.01 | 501 | -- | -- |
| 12.92 | 0.167 | 10.8 | -- | 0.2 | 0.206 | -- | -- | 0.148 | 3.15 | 41.19 | 938 | -- | -- |
| 17.87 | 0.198 | 10.8 | -0.0173 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 14.26 | 0.177 | 10.8 | -- | 0.261 | -- | -- | -- | 0.105 | 4.64 | -- | -- | -- | -- |
| 13.89 | 0.174 | 10.8 | -- | -- | 0.327 | -- | -- | 0.154 | -- | 39.35 | 541 | -- | -- |
| 17.88 | 0.197 | 10.8 | -- | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.37 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 12 |
| 2 | 11.40 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 20 |
| 7 | 11.44 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 17 |
| 14 | 11.47 | radiation | 40 | 720 | < th | dose independent | rect. | 11 | 19 |
| 21 | 11.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 8 | 9 |
| 28 | 11.52 | humidity | 90 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 35 | 11.54 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 48 | 11.57 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 49 | 11.58 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 23 |
| 52 | 11.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 68 | 11.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 69 | 11.61 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 9 |
| 74 | 11.61 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 76 | 11.61 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 77 | 11.62 | radiation | 40 | 720 | < th | dose independent | sin | 5 | NA |
| 83 | 11.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 87 | 11.63 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 3 |
| 90 | 11.63 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 12 |
| 104 | 11.63 | humidity | 90 | 720 | < th | dose dependent | sin | 2 | NA |
| 152 | 11.67 | radiation | 40 | 720 | < th | dose independent | rect. | 10 | 14 |
| 260 | 11.73 | radiation | 40 | 720 | < th | dose independent | no | NA | NA |
| 264 | 11.73 | humidity | 60 | 720 | > th | dose independent | rect. | 2 | 12 |
| 265 | 11.73 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 14 |
| 283 | 11.74 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 16 |
| 302 | 11.75 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 16 |
| 304 | 11.75 | humidity | 60 | 720 | > th | dose independent | rect. | 19 | 21 |
| 314 | 11.76 | humidity | 60 | 720 | > th | dose independent | rect. | 4 | 9 |
| 325 | 11.76 | humidity | 60 | 720 | > th | dose independent | rect. | 19 | 19 |
| 339 | 11.77 | radiation | 40 | 720 | > th | dose independent | rect. | 10 | 4 |
| 344 | 11.77 | humidity | 50 | 720 | > th | dose dependent | sin | 3 | NA |
| 355 | 11.77 | temperature | 10 | 30 | > th | dose dependent | rect. | 11 | 17 |
| 363 | 11.77 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 389 | 11.78 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 410 | 11.80 | radiation | 1 | 270 | > th | dose independent | sin | 0 | NA |
| 411 | 11.80 | radiation | 40 | 720 | < th | dose independent | sin | 17 | NA |
| 432 | 11.80 | humidity | 60 | 720 | > th | dose independent | rect. | 21 | 17 |
| 451 | 11.80 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 515 | 11.82 | radiation | 40 | 720 | > th | dose independent | sin | 22 | NA |
| 567 | 11.83 | radiation | 40 | 720 | > th | dose independent | sin | 20 | NA |
| 571 | 11.83 | radiation | 40 | 720 | > th | dose independent | no | NA | NA |
| 756 | 11.83 | humidity | 50 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 760 | 11.84 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 786 | 11.84 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 23 |
| 802 | 11.84 | radiation | 40 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 815 | 11.85 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 18 |
| 837 | 11.85 | radiation | 1 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 846 | 11.86 | humidity | 60 | 270 | > th | dose independent | rect. | 3 | 16 |
| 880 | 11.87 | humidity | 60 | 720 | > th | dose independent | sin | 5 | NA |
| 885 | 11.87 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 10 |
| 886 | 11.87 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 913 | 11.87 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 23 |
| 933 | 11.87 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 945 | 11.88 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |