BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0608300 Os01g0608300|J065034K24
         (49 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0608300  Conserved hypothetical protein                      103   2e-23
Os02g0594600  Conserved hypothetical protein                       99   7e-22
Os09g0118650                                                       96   4e-21

>Os01g0608300 Conserved hypothetical protein
          Length = 49

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  AGLGWTCGRGFGQVDMIRNGGTHESSDRLALLRPSKCPTARTDQYPTGQ 49
          AGLGWTCGRGFGQVDMIRNGGTHESSDRLALLRPSKCPTARTDQYPTGQ
Sbjct: 1  AGLGWTCGRGFGQVDMIRNGGTHESSDRLALLRPSKCPTARTDQYPTGQ 49



>Os02g0594600 Conserved hypothetical protein
          Length = 49

 Score = 99.0 bits (245), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 1  AGLGWTCGRGFGQVDMIRNGGTHESSDRLALLRPSKCPTARTDQYPTGQ 49
          AGLGWTCGRGFGQVDMI NGGT ESSDRLALLRPSKCPTARTDQYPTGQ
Sbjct: 1  AGLGWTCGRGFGQVDMIHNGGTRESSDRLALLRPSKCPTARTDQYPTGQ 49



>Os09g0118650 
          Length = 114

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%)

Query: 2   GLGWTCGRGFGQVDMIRNGGTHESSDRLALLRPSKCPTARTDQYPTGQ 49
           GLGWTCGRGFGQVDMIRNGGT ESS+RLALLRPSKCPTARTDQYP GQ
Sbjct: 67  GLGWTCGRGFGQVDMIRNGGTRESSNRLALLRPSKCPTARTDQYPIGQ 114



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,068,442
Number of extensions: 65581
Number of successful extensions: 106
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 49
Length of database: 17,035,801
Length adjustment: 22
Effective length of query: 27
Effective length of database: 15,887,093
Effective search space: 428951511
Effective search space used: 428951511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)