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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0594600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.38 (0.0509) R2 : 0.525
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.68 (0.171) R2dC : 0.189 R2C : 0.393
β3 : 1.61 (0.204) R2dE : 0.12 R2E : 0.325
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.345 (0.107) R2dN8 : 0.0149 R2N8 : 0.00716
σ : 0.951
deviance : 412.7
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_____
C
peak time of C : 9.53
E
wheather : radiation
threshold : 0.96
memory length : 13
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.14
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
391.91 0.93 4.37 0.538 1.69 1.61 2.58 -2.21 -0.301 9.45 0.9598 14 2.14 --
393.08 0.93 4.36 0.623 1.7 1.57 1.43 -- -0.271 9.59 0.9598 14 2.14 --
400.6 0.939 4.36 0.68 1.7 1.57 -- 0.208 -0.267 9.55 0.9598 14 2.14 --
400.69 0.938 4.36 0.676 1.7 1.57 -- -- -0.269 9.55 0.96 13 2.14 --
443.54 0.981 4.34 0.753 -- 2.71 -- 1.26 -0.277 -- 0.7198 36 0.164 --
442.61 0.986 4.33 0.681 2.65 -- 1.51 -- -0.239 9.05 -- -- -- --
450.51 0.994 4.33 0.732 2.65 -- -- -- -0.239 9.03 -- -- -- --
441.65 0.983 4.41 0.639 -- 2.6 -- -- -0.27 -- 0.6907 36 3.96e-07 --
412.7 0.951 4.38 -- 1.68 1.61 -- -- -0.345 9.53 0.96 13 2.14 --
854.49 1.37 4.4 0.728 -- -- -- -- -0.223 -- -- -- -- --
464.66 1.01 4.34 -- 2.65 -- -- -- -0.32 9.01 -- -- -- --
452.42 0.994 4.42 -- -- 2.61 -- -- -0.341 -- 0.6907 36 3.96e-07 --
868.49 1.38 4.42 -- -- -- -- -- -0.303 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 386.35 atmosphere 1010.0 10 < th dose independent rect. 9 20
7 392.75 temperature 15.0 270 > th dose independent rect. 6 22
8 393.66 radiation 1.0 10 > th dose independent sin 8 NA
15 394.49 temperature 15.0 90 > th dose independent rect. 9 19
19 395.33 radiation 1.0 30 > th dose independent rect. 18 15
23 395.64 wind 5.0 10 < th dose dependent rect. 5 4
29 396.51 radiation 10.0 10 < th dose dependent rect. 22 17
31 397.13 wind 3.0 10 < th dose independent rect. 5 4
32 397.32 radiation 1.0 30 > th dose independent rect. 5 4
60 398.18 radiation 1.0 30 < th dose independent rect. 22 16
62 398.23 temperature 15.0 10 > th dose independent rect. 9 20
80 399.00 radiation 1.0 30 < th dose independent sin 9 NA
82 399.11 radiation 1.0 30 < th dose independent rect. 22 14
98 399.35 radiation 1.0 30 < th dose independent rect. 22 10
113 400.26 wind 1.0 270 < th dose independent rect. 4 1
116 400.46 temperature 10.0 10 > th dose dependent rect. 9 20
123 400.75 wind 5.0 90 < th dose dependent rect. 4 5
147 402.02 temperature 15.0 10 > th dose independent rect. 22 7
157 402.81 wind 5.0 270 < th dose dependent rect. 4 2
162 403.07 temperature 15.0 270 > th dose independent rect. 7 10
173 403.33 radiation 10.0 10 < th dose dependent sin 9 NA
203 404.06 radiation 1.0 30 < th dose dependent rect. 22 10
217 404.30 radiation 1.0 270 > th dose independent rect. 4 2
234 404.39 temperature 10.0 10 > th dose dependent rect. 5 4
235 404.41 precipitation 0.1 10 < th dose independent rect. 9 20
236 404.41 precipitation 0.1 10 < th dose dependent rect. 9 20
298 405.61 atmosphere 1010.0 10 < th dose independent rect. 22 7
303 405.73 temperature 15.0 270 > th dose independent rect. 21 5
311 405.94 precipitation 0.1 10 < th dose independent rect. 5 4
312 405.94 precipitation 0.1 10 < th dose dependent rect. 5 4
314 406.01 radiation 1.0 10 < th dose dependent rect. 22 8
334 406.25 wind 9.0 10 < th dose independent rect. 9 20
339 406.29 precipitation 0.1 10 < th dose independent rect. 22 7
340 406.29 precipitation 0.1 10 < th dose dependent rect. 22 7
341 406.30 atmosphere 995.0 10 > th dose independent rect. 5 17
342 406.31 temperature 15.0 270 > th dose independent rect. 22 13
345 406.38 temperature 15.0 270 > th dose independent rect. 22 15
370 406.91 temperature 10.0 10 > th dose independent rect. 5 4
372 406.91 temperature 30.0 10 < th dose independent rect. 5 4
373 406.91 humidity 50.0 10 > th dose independent rect. 5 4
375 406.91 atmosphere 995.0 10 > th dose independent rect. 5 4
376 406.91 atmosphere 1015.0 10 < th dose independent rect. 5 4
420 407.65 radiation 40.0 10 < th dose independent rect. 5 4
444 407.89 wind 7.0 270 < th dose independent rect. 17 14
465 408.04 temperature 10.0 10 > th dose dependent rect. 22 7
478 408.08 atmosphere 1005.0 10 > th dose independent rect. 5 4
505 408.43 wind 9.0 10 < th dose independent rect. 22 7
507 408.43 temperature 30.0 10 < th dose independent rect. 22 7
508 408.43 humidity 50.0 10 > th dose independent rect. 22 7
511 408.43 atmosphere 995.0 10 > th dose independent rect. 22 7
517 408.43 temperature 10.0 10 > th dose independent rect. 5 17
519 408.43 atmosphere 1015.0 10 < th dose independent rect. 5 17
522 408.43 radiation 40.0 10 < th dose dependent rect. 22 7
523 408.44 atmosphere 995.0 10 > th dose dependent rect. 5 4
559 408.79 atmosphere 1015.0 10 < th dose dependent rect. 9 20
561 408.84 wind 1.0 90 > th dose independent rect. 8 21
584 408.89 wind 9.0 10 < th dose independent rect. 5 17
590 408.92 precipitation 0.1 10 < th dose independent rect. 5 17
591 408.92 precipitation 0.1 10 < th dose dependent rect. 5 17
607 408.97 wind 1.0 90 < th dose dependent rect. 4 19
612 409.10 atmosphere 1010.0 90 < th dose independent rect. 22 6
619 409.14 wind 7.0 1440 < th dose independent rect. 5 1
621 409.14 temperature 10.0 1440 > th dose independent rect. 5 1
624 409.14 temperature 30.0 1440 < th dose independent rect. 5 1
628 409.14 humidity 50.0 1440 > th dose independent rect. 5 1
637 409.14 atmosphere 995.0 1440 > th dose independent rect. 5 1
638 409.14 atmosphere 1015.0 1440 < th dose independent rect. 5 1
639 409.14 radiation 20.0 1440 < th dose independent rect. 5 1
648 409.14 temperature 10.0 1440 > th dose independent rect. 6 23
654 409.16 humidity 50.0 10 > th dose independent rect. 9 20
656 409.20 wind 1.0 90 > th dose independent rect. 23 6
665 409.27 atmosphere 995.0 270 > th dose independent rect. 2 19
677 409.36 precipitation 0.1 270 < th dose independent rect. 2 19
678 409.36 precipitation 0.1 270 < th dose dependent rect. 2 19
679 409.37 atmosphere 1010.0 270 < th dose independent rect. 22 4
682 409.38 humidity 90.0 4320 > th dose dependent rect. 3 3
685 409.41 temperature 15.0 270 > th dose independent rect. 24 23
687 409.42 wind 1.0 90 < th dose independent rect. 4 18
693 409.48 precipitation 0.1 270 < th dose independent rect. 17 14
696 409.48 precipitation 0.1 270 < th dose dependent rect. 17 14
697 409.50 precipitation 0.1 270 < th dose independent rect. 1 21
698 409.50 precipitation 0.1 270 < th dose dependent rect. 1 21
709 409.58 wind 9.0 10 < th dose dependent rect. 18 15
719 409.63 temperature 15.0 1440 > th dose independent rect. 5 18
741 409.83 radiation 20.0 4320 > th dose independent rect. 6 2
753 409.83 atmosphere 995.0 270 > th dose independent rect. 17 14
787 410.03 temperature 20.0 10 > th dose independent rect. 9 9
813 410.20 humidity 90.0 4320 > th dose independent rect. 1 3
835 410.37 humidity 90.0 4320 > th dose independent rect. 1 6
839 410.47 atmosphere 1015.0 1440 < th dose independent rect. 24 5
840 410.48 wind 9.0 10 < th dose dependent rect. 5 17
841 410.50 precipitation 0.1 270 < th dose independent rect. 3 4
844 410.50 precipitation 0.1 270 < th dose dependent rect. 3 4
850 410.54 radiation 1.0 270 > th dose dependent rect. 18 12
869 410.61 humidity 90.0 4320 > th dose independent rect. 1 9
943 411.01 temperature 25.0 270 < th dose independent rect. 4 1
944 411.01 radiation 20.0 4320 > th dose dependent rect. 6 2
978 411.12 radiation 30.0 4320 < th dose independent rect. 23 9