BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0600500 Os01g0600500|J065217G16
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0600500 HAD-superfamily subfamily IB hydrolase, hypoth... 249 4e-67
Os01g0720400 HAD-superfamily subfamily IB hydrolase, hypoth... 96 6e-21
Os02g0226200 HAD-superfamily subfamily IB hydrolase, hypoth... 93 4e-20
>Os01g0600500 HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein
Length = 119
Score = 249 bits (636), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 LYHVQGKIIERIQATANGKRHFIYIGDGRGDYCPSLKLGEGDYVMPKEKYPLWNLISSNK 60
LYHVQGKIIERIQATANGKRHFIYIGDGRGDYCPSLKLGEGDYVMPKEKYPLWNLISSNK
Sbjct: 1 LYHVQGKIIERIQATANGKRHFIYIGDGRGDYCPSLKLGEGDYVMPKEKYPLWNLISSNK 60
Query: 61 QLLKAEVHPWNNGEELEQTLLKLVNKLITPPAQPSQFEYKCDMSNPVSTEVGQALRVPH 119
QLLKAEVHPWNNGEELEQTLLKLVNKLITPPAQPSQFEYKCDMSNPVSTEVGQALRVPH
Sbjct: 61 QLLKAEVHPWNNGEELEQTLLKLVNKLITPPAQPSQFEYKCDMSNPVSTEVGQALRVPH 119
>Os01g0720400 HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein
Length = 274
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
Query: 5 QGKIIERIQATAN--GKRHFIYIGDGRGDYCPSLKLGEGDYVMPKEKYPLWNLISSNKQL 62
+G++++RI+A+A GKR IY+GDGRGDYCPSL+LG D++MP+ +P+W LI + L
Sbjct: 157 KGQVLDRIRASAGAAGKR-VIYLGDGRGDYCPSLRLGRDDFMMPRRGFPVWELICEDPSL 215
Query: 63 LKAEVHPWNNGEELEQT 79
L AEVH W +G E+E+T
Sbjct: 216 LHAEVHSWADGAEMEET 232
>Os02g0226200 HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein
Length = 296
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 10/96 (10%)
Query: 4 VQGKIIERI---------QATANGKRHFIYIGDGRGDYCPSLKLGEGDYVMPKEKYPLWN 54
+GK++ERI A A +R +Y+GDGRGDYCPSLKL E DYVMP++ YP+W+
Sbjct: 159 CKGKVMERIIDELSCGCGGALAARRRRVVYVGDGRGDYCPSLKLTEMDYVMPRKGYPVWD 218
Query: 55 LIS-SNKQLLKAEVHPWNNGEELEQTLLKLVNKLIT 89
LI+ ++ ++A+V W + E+LE LL +V + +T
Sbjct: 219 LIAGGDRAAVRADVREWADFEDLEAVLLGIVAECLT 254
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,476,785
Number of extensions: 179549
Number of successful extensions: 311
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 3
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)