Os01g0720400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein.
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Os01g0720400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.39 | 0.561 | 14.8 | -1.64 | 3.74 | -1.14 | -2.4 | 6.17 | -0.509 | 7.14 | 18.91 | 779 | -- | -- |
| 156.55 | 0.587 | 14.7 | -1.46 | 2.78 | -0.919 | 1.75 | -- | -0.326 | 6.05 | 20 | 887 | -- | -- |
| 148.26 | 0.567 | 14.8 | -1.63 | 3.47 | -0.809 | -- | 3.55 | -0.486 | 7.25 | 70.5 | 826 | -- | -- |
| 163.41 | 0.599 | 14.7 | -1.44 | 2.8 | -0.75 | -- | -- | -0.332 | 6.34 | 20 | 887 | -- | -- |
| 384.81 | 0.914 | 14.7 | -1.33 | -- | 2.54 | -- | 2.03 | -0.0407 | -- | 89.57 | 760 | -- | -- |
| 171.1 | 0.613 | 14.7 | -1.44 | 2.98 | -- | 1.01 | -- | -0.332 | 7.29 | -- | -- | -- | -- |
| 173.8 | 0.617 | 14.7 | -1.42 | 2.98 | -- | -- | -- | -0.333 | 7.32 | -- | -- | -- | -- |
| 235.17 | 0.714 | 14.8 | -0.443 | -- | 3.73 | -- | -- | -0.275 | -- | 0.2996 | 888 | -- | -- |
| 217.91 | 0.691 | 14.7 | -- | 2.79 | -0.704 | -- | -- | -0.172 | 6.43 | 20 | 887 | -- | -- |
| 647.08 | 1.19 | 14.8 | -1.37 | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
| 227.04 | 0.705 | 14.7 | -- | 2.97 | -- | -- | -- | -0.175 | 7.35 | -- | -- | -- | -- |
| 248.41 | 0.734 | 14.8 | -- | -- | 4.18 | -- | -- | -0.106 | -- | 0.2478 | 901 | -- | -- |
| 696.63 | 1.23 | 14.8 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 3 | 133.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 4 | 133.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 12 | 133.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 34 | 135.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 46 | 136.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 57 | 136.85 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 22 |
| 122 | 138.68 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 123 | 138.71 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 6 |
| 133 | 138.93 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 158 | 139.29 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 9 |
| 163 | 139.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 168 | 139.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 172 | 139.46 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 231 | 140.30 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 3 |
| 239 | 140.39 | radiation | 10 | 720 | < th | dose dependent | sin | 23 | NA |
| 243 | 140.49 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 277 | 141.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 298 | 141.27 | radiation | 20 | 720 | < th | dose independent | rect. | 5 | 22 |
| 316 | 141.40 | radiation | 20 | 720 | < th | dose independent | rect. | 5 | 18 |
| 321 | 141.49 | radiation | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 367 | 141.98 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 16 |
| 382 | 142.19 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 403 | 142.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 428 | 142.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 437 | 142.54 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 463 | 142.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 497 | 142.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 509 | 142.99 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 521 | 143.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 591 | 143.37 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 12 |
| 603 | 143.42 | radiation | 20 | 720 | < th | dose independent | rect. | 14 | 23 |
| 636 | 143.57 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 645 | 143.61 | radiation | 20 | 720 | < th | dose independent | no | NA | NA |
| 655 | 143.64 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 671 | 143.71 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 681 | 143.79 | radiation | 20 | 720 | < th | dose independent | rect. | 12 | 1 |
| 687 | 143.83 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 12 |
| 698 | 143.91 | radiation | 20 | 720 | < th | dose dependent | no | NA | NA |
| 778 | 144.17 | radiation | 20 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 856 | 144.47 | temperature | 20 | 270 | > th | dose independent | sin | 20 | NA |
| 915 | 144.66 | temperature | 20 | 90 | > th | dose independent | sin | 14 | NA |
| 942 | 144.75 | radiation | 20 | 720 | < th | dose dependent | rect. | 14 | 23 |