Os01g0600500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein.
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Os01g0600500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.8 | 0.55 | 7.82 | -0.856 | 0.994 | 1.9 | 0.111 | 0.17 | -0.0118 | 10.3 | 29.5 | 90 | -- | -- |
| 136.83 | 0.545 | 7.82 | -0.826 | 0.992 | 1.9 | 0.0787 | -- | -0.0043 | 10.3 | 29.5 | 89 | -- | -- |
| 136.84 | 0.545 | 7.82 | -0.848 | 0.992 | 1.9 | -- | 0.119 | -0.0126 | 10.3 | 29.5 | 89 | -- | -- |
| 136.85 | 0.545 | 7.82 | -0.823 | 0.993 | 1.9 | -- | -- | -0.00344 | 10.3 | 29.5 | 89 | -- | -- |
| 167.86 | 0.603 | 7.84 | -0.842 | -- | 1.98 | -- | 0.305 | 0.0218 | -- | 28.9 | 467 | -- | -- |
| 184.69 | 0.637 | 7.9 | -1.3 | 0.96 | -- | 0.396 | -- | -0.386 | 7.82 | -- | -- | -- | -- |
| 185.14 | 0.637 | 7.9 | -1.29 | 0.96 | -- | -- | -- | -0.386 | 7.86 | -- | -- | -- | -- |
| 167.98 | 0.604 | 7.83 | -0.782 | -- | 1.98 | -- | -- | 0.034 | -- | 29.01 | 476 | -- | -- |
| 152.74 | 0.576 | 7.78 | -- | 1.04 | 2.26 | -- | -- | 0.152 | 10.8 | 29.4 | 92 | -- | -- |
| 235.13 | 0.717 | 7.93 | -1.28 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 229.22 | 0.708 | 7.87 | -- | 0.951 | -- | -- | -- | -0.242 | 7.95 | -- | -- | -- | -- |
| 182.5 | 0.629 | 7.8 | -- | -- | 2.25 | -- | -- | 0.174 | -- | 28.73 | 495 | -- | -- |
| 278.5 | 0.779 | 7.89 | -- | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 129.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 5 | 129.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 51 | 133.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 57 | 134.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 67 | 134.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 91 | 135.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 100 | 136.29 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 111 | 136.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 117 | 136.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 119 | 136.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 126 | 137.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 127 | 137.05 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 131 | 137.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 149 | 137.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 159 | 137.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 174 | 138.44 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 181 | 138.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 200 | 138.93 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 201 | 138.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 209 | 139.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 222 | 139.23 | temperature | 15 | 90 | > th | dose dependent | sin | 3 | NA |
| 282 | 139.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 285 | 140.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 288 | 140.05 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 291 | 140.08 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 17 |
| 306 | 140.25 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 309 | 140.30 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 347 | 140.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 361 | 140.99 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 22 |
| 377 | 141.09 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 414 | 141.52 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 16 |
| 454 | 141.86 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 22 |
| 491 | 142.16 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 497 | 142.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 604 | 143.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 632 | 143.27 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 23 |
| 633 | 143.27 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 23 |
| 642 | 143.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 681 | 143.62 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 699 | 143.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 702 | 143.77 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 712 | 143.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 715 | 143.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 719 | 143.87 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 740 | 143.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 749 | 143.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 752 | 144.01 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 758 | 144.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 804 | 144.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 810 | 144.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 822 | 144.30 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 825 | 144.31 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 20 |
| 831 | 144.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 923 | 144.59 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 22 |
| 924 | 144.59 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 952 | 144.72 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |