BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0589200 Os01g0589200|Os01g0589200
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0589200  Conserved hypothetical protein                      635   0.0  
Os01g0716500  SAM (and some other nucleotide) binding motif ...   179   2e-45

>Os01g0589200 Conserved hypothetical protein
          Length = 371

 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/371 (85%), Positives = 318/371 (85%)

Query: 1   MLSSCLCFFFLTCVWSFADITIGVPSRDARSQIEDPRPDGWAVHQAGCRVRRGAAGLPQG 60
           MLSSCLCFFFLTCVWSFADITIGVPSRDARSQIEDPRPDGWAVHQAGCRVRRGAAGLPQG
Sbjct: 1   MLSSCLCFFFLTCVWSFADITIGVPSRDARSQIEDPRPDGWAVHQAGCRVRRGAAGLPQG 60

Query: 61  PVRQARVAXXXXXXXXXXXXXXXXXXXXXKHSNSPAFSRMPSQSLCLPNVDIYRHPIRVA 120
           PVRQARVA                     KHSNSPAFSRMPSQSLCLPNVDIYRHPIRVA
Sbjct: 61  PVRQARVAHRPPPRRLGRRHRQWPGRHRRKHSNSPAFSRMPSQSLCLPNVDIYRHPIRVA 120

Query: 121 VCKVAEHYDSVVATDVSAEQLRRAVPHPKVRYLHTPXXXXXXXXXXXXXXXXXCVDLITV 180
           VCKVAEHYDSVVATDVSAEQLRRAVPHPKVRYLHTP                 CVDLITV
Sbjct: 121 VCKVAEHYDSVVATDVSAEQLRRAVPHPKVRYLHTPDAGADDDDLVAALGGEGCVDLITV 180

Query: 181 AEAAHWFDLPAFYGAARRLLRKPGGVIAVWGYNYRVSPVEDMMSRFLHTTLPYWDSRARY 240
           AEAAHWFDLPAFYGAARRLLRKPGGVIAVWGYNYRVSPVEDMMSRFLHTTLPYWDSRARY
Sbjct: 181 AEAAHWFDLPAFYGAARRLLRKPGGVIAVWGYNYRVSPVEDMMSRFLHTTLPYWDSRARY 240

Query: 241 ITTWAQHTLQFYNLAIASKHHPWRKESLTCCSCRYVIDGYRDLPFPFDGVGLGKEGEPAG 300
           ITTWAQHTLQFYNLAIASKHHPWRKESLTCCSCRYVIDGYRDLPFPFDGVGLGKEGEPAG
Sbjct: 241 ITTWAQHTLQFYNLAIASKHHPWRKESLTCCSCRYVIDGYRDLPFPFDGVGLGKEGEPAG 300

Query: 301 FDMEHEMAFPGLVRMLRSWSAVATARQRGXXXXXXXXXXXXXXXWGGASLVRKVTFKAFL 360
           FDMEHEMAFPGLVRMLRSWSAVATARQRG               WGGASLVRKVTFKAFL
Sbjct: 301 FDMEHEMAFPGLVRMLRSWSAVATARQRGVDLLDERVVRRLEEEWGGASLVRKVTFKAFL 360

Query: 361 LAGTVRADDPA 371
           LAGTVRADDPA
Sbjct: 361 LAGTVRADDPA 371



>Os01g0716500 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 263

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/247 (40%), Positives = 129/247 (52%), Gaps = 39/247 (15%)

Query: 120 AVCKVAEHYDSVVATDVSAEQLRRAVPHPKVRYLHTPXXXXXXXXXXXXXXXXXCVDLIT 179
           A   +AEHYDSVVATD S  Q+R AV HPKVRYLHTP                  +DL+ 
Sbjct: 47  ASISIAEHYDSVVATDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEG-SLDLVV 105

Query: 180 VAEAAHWFDLPAFYGAARRLLRKPGGVIAVWGYNYRVSPVEDMMSRFLHTTL-PYWDSRA 238
           VA + HWFD+P FY  A R+L++PGGV+AVWGYNY + P ED +   L+  + PY D R 
Sbjct: 106 VATSIHWFDIPLFYAVANRVLKRPGGVLAVWGYNYEIHPFEDKLHGQLYPAMRPYMDPR- 164

Query: 239 RYITTWAQHTLQFYNLAIASKHHPWRKESLTCCSCRYVIDGYRDLPFPFDGVGLGKEGEP 298
                                              R  +D YRDLPFPF+ VG+G+EGEP
Sbjct: 165 ----------------------------------TRLAMDRYRDLPFPFEPVGVGREGEP 190

Query: 299 AGFDMEHEMAFPGLVRMLRSWSAVATARQRGXXXXXXXXXXXX--XXXWGGASLVRKVTF 356
           A  D+E +M    LV  L++ S V TAR++G                 WG  ++ RK+ F
Sbjct: 191 ADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKDVMKGVEAEWGDPAVARKLVF 250

Query: 357 KAFLLAG 363
           KAF+LAG
Sbjct: 251 KAFMLAG 257



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,989,855
Number of extensions: 462321
Number of successful extensions: 1201
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1196
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)