Os01g0716500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os01g0716500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.59 | 0.535 | 11.1 | 0.606 | 0.481 | 0.786 | 0.252 | -0.0501 | 0.373 | 19.6 | 17.22 | 10 | -- | -- |
| 129.49 | 0.53 | 11.1 | 0.603 | 0.465 | 0.801 | 0.219 | -- | 0.376 | 19.4 | 15.62 | 10 | -- | -- |
| 129.59 | 0.53 | 11.1 | 0.6 | 0.462 | 0.814 | -- | 0.0543 | 0.376 | 19.2 | 15.57 | 10 | -- | -- |
| 129.61 | 0.53 | 11.1 | 0.599 | 0.46 | 0.817 | -- | -- | 0.377 | 19.2 | 15.67 | 10 | -- | -- |
| 138.19 | 0.55 | 11.1 | 0.594 | -- | 0.923 | -- | 0.0604 | 0.363 | -- | 13.34 | 8 | -- | -- |
| 140.42 | 0.556 | 11.1 | 0.592 | 1.12 | -- | 0.296 | -- | 0.358 | 22.4 | -- | -- | -- | -- |
| 140.77 | 0.556 | 11.1 | 0.581 | 1.12 | -- | -- | -- | 0.357 | 22.4 | -- | -- | -- | -- |
| 138.15 | 0.55 | 11.1 | 0.59 | -- | 0.921 | -- | -- | 0.363 | -- | 12.97 | 4 | -- | -- |
| 139.02 | 0.549 | 11.1 | -- | 0.466 | 0.771 | -- | -- | 0.314 | 19.6 | 14.73 | 10 | -- | -- |
| 216.97 | 0.688 | 11.1 | 0.599 | -- | -- | -- | -- | 0.361 | -- | -- | -- | -- | -- |
| 149.66 | 0.572 | 11.2 | -- | 1.12 | -- | -- | -- | 0.293 | 22.4 | -- | -- | -- | -- |
| 146.97 | 0.566 | 11.1 | -- | -- | 0.911 | -- | -- | 0.299 | -- | 11.33 | 4 | -- | -- |
| 226.43 | 0.702 | 11.1 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.53 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 2 | 122.27 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 6 | 122.69 | radiation | 10.0 | 10 | < th | dose dependent | sin | 20 | NA |
| 8 | 122.83 | radiation | 10.0 | 90 | < th | dose dependent | sin | 21 | NA |
| 10 | 122.98 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 14 | 123.29 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 16 | 123.40 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 8 |
| 17 | 123.43 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 11 |
| 20 | 123.46 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 42 | 123.99 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 44 | 123.99 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 49 | 124.20 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 50 | 124.21 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 13 |
| 53 | 124.27 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 76 | 124.76 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 88 | 124.97 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 10 |
| 107 | 125.23 | radiation | 10.0 | 90 | > th | dose independent | sin | 20 | NA |
| 126 | 125.41 | temperature | 25.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 131 | 125.49 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 9 |
| 136 | 125.51 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 10 |
| 142 | 125.56 | radiation | 1.0 | 10 | < th | dose independent | sin | 21 | NA |
| 162 | 125.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 176 | 125.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 179 | 125.82 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 183 | 125.82 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 189 | 125.82 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 190 | 125.82 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 199 | 125.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 207 | 125.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 219 | 125.95 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 232 | 126.14 | radiation | 1.0 | 90 | < th | dose independent | sin | 22 | NA |
| 234 | 126.18 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 235 | 126.18 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 256 | 126.31 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 266 | 126.35 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 6 |
| 276 | 126.44 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 280 | 126.48 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 7 |
| 282 | 126.49 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 307 | 126.63 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 22 |
| 340 | 126.76 | radiation | 10.0 | 90 | > th | dose independent | rect. | 11 | 7 |
| 364 | 126.82 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 365 | 126.83 | humidity | 70.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 376 | 126.90 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 397 | 127.05 | wind | 7.0 | 270 | > th | dose independent | rect. | 15 | 6 |
| 414 | 127.11 | radiation | 10.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 428 | 127.12 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 11 |
| 450 | 127.22 | wind | 7.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 458 | 127.24 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 463 | 127.27 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 466 | 127.29 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 471 | 127.30 | wind | 9.0 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 480 | 127.34 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 22 |
| 535 | 127.50 | wind | 7.0 | 270 | > th | dose independent | rect. | 17 | 1 |
| 536 | 127.50 | wind | 5.0 | 270 | > th | dose dependent | rect. | 17 | 1 |
| 541 | 127.52 | wind | 5.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 548 | 127.54 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 560 | 127.58 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 4 |
| 562 | 127.59 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 567 | 127.61 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 593 | 127.70 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 5 |
| 624 | 127.81 | wind | 7.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 641 | 127.84 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 667 | 127.92 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 678 | 127.95 | wind | 5.0 | 270 | < th | dose independent | rect. | 13 | 14 |
| 683 | 127.97 | radiation | 10.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 684 | 127.98 | wind | 5.0 | 90 | > th | dose independent | rect. | 17 | 4 |
| 705 | 128.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 708 | 128.06 | humidity | 60.0 | 90 | > th | dose independent | rect. | 16 | 4 |
| 711 | 128.06 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 723 | 128.08 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 787 | 128.18 | humidity | 80.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 802 | 128.23 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 805 | 128.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 819 | 128.25 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 826 | 128.26 | temperature | 10.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 827 | 128.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 828 | 128.26 | humidity | 50.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 831 | 128.26 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 835 | 128.26 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 836 | 128.26 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 857 | 128.30 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 11 |
| 885 | 128.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 891 | 128.33 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 916 | 128.37 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 9 |
| 917 | 128.37 | wind | 5.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 921 | 128.37 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 947 | 128.44 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 3 |
| 948 | 128.44 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 975 | 128.49 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |