BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0716500 Os01g0716500|AK101454
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10830.1 | chr5:3423731-3424649 FORWARD LENGTH=262 258 3e-69
AT4G22530.1 | chr4:11859247-11860129 REVERSE LENGTH=262 255 1e-68
AT3G54150.1 | chr3:20050802-20052742 REVERSE LENGTH=324 239 8e-64
AT1G55450.2 | chr1:20705274-20706825 REVERSE LENGTH=321 228 2e-60
AT3G61210.1 | chr3:22658881-22659815 REVERSE LENGTH=262 226 1e-59
AT2G41380.1 | chr2:17251981-17252886 FORWARD LENGTH=270 170 9e-43
>AT5G10830.1 | chr5:3423731-3424649 FORWARD LENGTH=262
Length = 261
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 178/263 (67%), Gaps = 4/263 (1%)
Query: 1 MAGLYERPSETYTKKRPRYPDAWFSKLAALTAGHHRAWDAGCGTGQASISIAEHYDSVVA 60
MAGL+++ ++ Y RP YP WFSKLA LT H AWDA G GQA++++AEHY+SVVA
Sbjct: 1 MAGLFDKQADLYLDARPNYPSEWFSKLADLTDHHGLAWDAATGNGQAALAVAEHYESVVA 60
Query: 61 TDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEGSLDLVVVATSIHWFDIPLFYA 120
TD SE Q++ A HPK+ Y HTP +++D+LV ++GGE S+DL+ VA +HWFD+P FY+
Sbjct: 61 TDVSESQLKLATPHPKINYRHTPTSMTDDELVELIGGENSVDLITVAQGVHWFDLPRFYS 120
Query: 121 VANRVLKRPGGVLAVWGYN-YEIHPFEDKLHGQLYPAMRPYMD-PRTRLAMDRYRDLPFP 178
VA R+L++PGG++AVWGYN + P D + +L+ P+ P + D Y LPFP
Sbjct: 121 VATRLLRKPGGIIAVWGYNDVIVSPEFDAVQYRLHATTLPFWKYPYIQHIFDSYEALPFP 180
Query: 179 FEPVGVGREGEPADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKDVMKGVEAE 238
FE VG+G EGEP +++ + + ++ K+ S + TAREKGV+L + + +++ +E
Sbjct: 181 FENVGMGSEGEPLKLEMPKTTSFEGIIRMFKSWSAIVTAREKGVEL--LPESLVRELETA 238
Query: 239 WGDPAVARKLVFKAFMLAGKPKV 261
WG + R +V+KAFM+AGK +V
Sbjct: 239 WGGSDLVRSVVYKAFMIAGKVRV 261
>AT4G22530.1 | chr4:11859247-11860129 REVERSE LENGTH=262
Length = 261
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 179/260 (68%), Gaps = 5/260 (1%)
Query: 1 MAGLYERPSETYTKKRPRYPDAWFSKLAALTAGHHRAWDAGCGTGQASISIAEHYDSVVA 60
M+G+Y+ ++ Y RP YP W+SKLAAL+ H+ AWDAG G GQA+I IAEHY+ VVA
Sbjct: 1 MSGVYDSQADIYLDARPTYPADWYSKLAALSHRHNLAWDAGTGNGQAAIGIAEHYERVVA 60
Query: 61 TDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEGSLDLVVVATSIHWFDIPLFYA 120
TD SE + HPKV Y HTP ++ED++V ++GGE S+DL+ VAT++HWFD+P FYA
Sbjct: 61 TDVSETMLNLGKPHPKVTYHHTPSSMTEDEMVDLIGGENSVDLITVATAVHWFDLPRFYA 120
Query: 121 VANRVLKRPGGVLAVWGYNYE--IHPFEDKLHGQLYPAMRPYMD-PRTRLAMDRYRDLPF 177
+ANR+L++PGG++AVW YN + ++P D + + PY P ++ +D Y+ LPF
Sbjct: 121 IANRLLRKPGGIIAVWSYNTDMVVNPEFDSVMTRFIAETLPYCKFPESQYFLDGYKTLPF 180
Query: 178 PFEPVGVGREGEPADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKDVMKGVEA 237
PFE VG+G EG+P +++++ ++ + + L++ S V A+EKGVDL ++ +V+K +E
Sbjct: 181 PFESVGLGSEGKPMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDL--LSDNVVKELET 238
Query: 238 EWGDPAVARKLVFKAFMLAG 257
WG + R +V+K FMLAG
Sbjct: 239 AWGGYELVRTIVYKTFMLAG 258
>AT3G54150.1 | chr3:20050802-20052742 REVERSE LENGTH=324
Length = 323
Score = 239 bits (611), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 167/259 (64%), Gaps = 3/259 (1%)
Query: 1 MAGLYERPSETYTKKRPRYPDAWFSKLAALTAGHHRAWDAGCGTGQASISIAEHYDSVVA 60
MA L E+ +E Y RPRYP WF K+AA T H AWD G G GQA+I + EHY++VVA
Sbjct: 1 MAALSEKEAEAYLDARPRYPIDWFKKIAARTQDHKFAWDVGTGNGQAAIGLVEHYENVVA 60
Query: 61 TDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEGSLDLVVVATSIHWFDIPLFYA 120
TD +E Q++ A+ H ++ Y HTP +SED++V ++GGE S+DL+V A ++H+FD+ +FY
Sbjct: 61 TDINEAQLQRAIKHSRISYHHTPTTISEDEMVDLLGGENSVDLIVAAQAVHFFDLNVFYN 120
Query: 121 VANRVLKRPGGVLAVWGYNYEIHPFE-DKLHGQLYPAMRPYMDPRTRLAMDRYRDLPFPF 179
VA RVL++ GG++AVW YN I E D + +L + P+ P LA D Y+ L FPF
Sbjct: 121 VAKRVLRKEGGLIAVWVYNDIIISHEIDPIMKRLVDSTLPFRTPIMNLAFDGYKTLTFPF 180
Query: 180 EPVGVGREGEPADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKDVMKGVEAEW 239
E +G+G EG+P +DI ++L +GFL++ A+EKGV+L + +D++ E W
Sbjct: 181 ETIGMGSEGKPITLDIPHKLSLKGFIGFLRSWQPAMKAKEKGVEL--INEDLITKFEEAW 238
Query: 240 GDPAVARKLVFKAFMLAGK 258
GD + + +KA M+ GK
Sbjct: 239 GDETQVKDVFYKAHMIVGK 257
>AT1G55450.2 | chr1:20705274-20706825 REVERSE LENGTH=321
Length = 320
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 168/268 (62%), Gaps = 12/268 (4%)
Query: 1 MAGLYERPSETYTKKRPRYPDAWFSKLAALTAGHHRAWDAGCGTGQASISI--------- 51
MA L ++ ++ Y RPRYP WF+KLAA T H AWD G G GQA+I +
Sbjct: 1 MAALSDKLADAYQNARPRYPIDWFTKLAARTGQHKSAWDVGTGNGQAAIGVSFFHLVPKL 60
Query: 52 AEHYDSVVATDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEGSLDLVVVATSIH 111
AE+++ V ATD +E Q++ AV H ++ Y HTP +SED +VA+VGG+ S+DL+V A ++H
Sbjct: 61 AEYFEKVTATDINEAQLKRAVKHERISYHHTPTTMSEDQMVALVGGDNSVDLIVAAQAVH 120
Query: 112 WFDIPLFYAVANRVLKRPGGVLAVWGYN-YEIHPFEDKLHGQLYPAMRPYMDPRTRLAMD 170
+FD+ FY VA RVL++ GG++AV+ YN I P D + +L + P+ P LA D
Sbjct: 121 YFDLAPFYNVAKRVLRKEGGLIAVFVYNDIIISPEVDSIMKRLVDSTFPFRTPVMNLAFD 180
Query: 171 RYRDLPFPFEPVGVGREGEPADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKD 230
Y+ LPFPFE +G+G EG+P +DI ++L +GFL++ A+E+GV+L VT+D
Sbjct: 181 GYKTLPFPFESIGMGSEGKPIMLDIPHKLSLKGFIGFLRSWQPAMKAKERGVEL--VTED 238
Query: 231 VMKGVEAEWGDPAVARKLVFKAFMLAGK 258
++ E WGD + + +KA M+ GK
Sbjct: 239 LISKFEDAWGDDDDVKDIFYKAHMIVGK 266
>AT3G61210.1 | chr3:22658881-22659815 REVERSE LENGTH=262
Length = 261
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 163/259 (62%), Gaps = 3/259 (1%)
Query: 1 MAGLYERPSETYTKKRPRYPDAWFSKLAALTAGHHRAWDAGCGTGQASISIAEHYDSVVA 60
+A L + ++ Y RP+YP W+ LA T+ H AWD G G GQA+I +AE+Y VVA
Sbjct: 4 LAALSGKQADEYLNARPKYPTIWYKVLAGRTSNHKVAWDVGTGNGQAAIGVAEYYQKVVA 63
Query: 61 TDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEGSLDLVVVATSIHWFDIPLFYA 120
TD +E Q++ A+ HPKV Y HTP +S+DDLV ++GGE S+D+++ A ++H+FD+ FY
Sbjct: 64 TDINESQLQRAMKHPKVTYYHTPSSMSDDDLVTLLGGENSIDIIIAAQALHYFDLKRFYP 123
Query: 121 VANRVLKRPGGVLAVWGYN-YEIHPFEDKLHGQLYPAMRPYMDPRTRLAMDRYRDLPFPF 179
+ RVL++ GG++ VW YN I P D + +L + PY +P LA D Y+ + FPF
Sbjct: 124 IVKRVLRKQGGIIVVWVYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDGYKTIEFPF 183
Query: 180 EPVGVGREGEPADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKDVMKGVEAEW 239
+ + +G +G P +DI ++LD +GFLK+ + A+E+G DL +T ++ + W
Sbjct: 184 KNIRMGTQGRPKALDIPHMLSLDGFLGFLKSWQPLVKAKEQGEDL--LTSYMIDEFKEAW 241
Query: 240 GDPAVARKLVFKAFMLAGK 258
GD + + +KAFMLAGK
Sbjct: 242 GDDEQVKDVHYKAFMLAGK 260
>AT2G41380.1 | chr2:17251981-17252886 FORWARD LENGTH=270
Length = 269
Score = 170 bits (430), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 144/265 (54%), Gaps = 9/265 (3%)
Query: 1 MAGLYERPSETYTKKRPRYPDAWFSKLAALTAGHHRAWDAGCGTGQASISIAEHYDSVVA 60
MA L+ + +E Y RP YP F +A+ T H AWD G G+GQAS S+A Y +V+A
Sbjct: 1 MAKLFIKQAEQYAAARPSYPTKLFEYIASKTPCHDLAWDVGAGSGQASRSLAGIYKNVIA 60
Query: 61 TDASEGQIRHAVAHPKVRYLHTPVDLSEDDLVAMVGGEGSLDLVVVATSIHWFDIPLFYA 120
TD S Q+ A P VRY TP +S ++ +V E S+DLV VA ++HWFD+ FY+
Sbjct: 61 TDTSSKQLEFAAKLPNVRYEITPPTMSSSEIEKLVAPESSVDLVTVAQALHWFDLTNFYS 120
Query: 121 VANRVLKRPGGVLAVWGY-NYEIHPFEDKLHGQLY-PAMRPYMDPRTRLAMDRYRDLPFP 178
VLK+P GV+A W Y N E++ DK+ + Y + P+ D RL D YR + FP
Sbjct: 121 NVKHVLKKPNGVIAAWCYTNPEVNDAVDKVFQRFYDEKLGPHWDLARRLVEDGYRGIEFP 180
Query: 179 FEPVGVGREGE----PADVDIEVDMTLDDLVGFLKTGSVVTTAREKGVDLEAVTKDVMKG 234
FE V E P E +M ++ + +L++ S TA+EKG LE +T ++
Sbjct: 181 FEKVDNDESTESQSFPVRFVTEKEMVFEEYMTYLRSSSAYQTAKEKG--LELLTAEMEGE 238
Query: 235 VEAEWGDPAVARKLV-FKAFMLAGK 258
W + +K+V + ++L G+
Sbjct: 239 FAGSWKEDGKEKKVVRYPIYLLIGR 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,948,938
Number of extensions: 252100
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 6
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)