BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0588600 Os01g0588600|Os01g0588600
(291 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0588600 Protein of unknown function DUF572 family protein 459 e-129
Os01g0588700 Protein of unknown function DUF572 family protein 211 5e-55
>Os01g0588600 Protein of unknown function DUF572 family protein
Length = 291
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/291 (79%), Positives = 232/291 (79%)
Query: 1 MAERKVINKHYPDDFDPSKIPRRRQHKKQMVVRMMLPMTVRCAACGEYIGRGTKFNSRKE 60
MAERKVINKHYPDDFDPSKIPRRRQHKKQMVVRMMLPMTVRCAACGEYIGRGTKFNSRKE
Sbjct: 1 MAERKVINKHYPDDFDPSKIPRRRQHKKQMVVRMMLPMTVRCAACGEYIGRGTKFNSRKE 60
Query: 61 DVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATRPSYEPWPXXXXXXX 120
DVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATRPSYEPWP
Sbjct: 61 DVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATRPSYEPWPAAAAEAG 120
Query: 121 XXXXXXXDAMTALEGRCRDARREMGVDAALEEMRSLKSRRAGVTPEQXXXXXXXXXXXXX 180
DAMTALEGRCRDARREMGVDAALEEMRSLKSRRAGVTPEQ
Sbjct: 121 REERGGGDAMTALEGRCRDARREMGVDAALEEMRSLKSRRAGVTPEQLLESLRRRGEALA 180
Query: 181 XXXXXXXXXISSIAFGNAKERSLRRIXXXXXXXXXXXXXXSCLARAAMATTSHQAXXXXX 240
ISSIAFGNAKERSLRRI SCLARAAMATTSHQA
Sbjct: 181 ELEEDDEKLISSIAFGNAKERSLRRIDDGDDEDDEEDFFDSCLARAAMATTSHQAKKRPP 240
Query: 241 XXXXDAVKSLVVSKKRRPESMDQAAWPPSSGKTTASNGALQVLCCNYDDEE 291
DAVKSLVVSKKRRPESMDQAAWPPSSGKTTASNGALQVLCCNYDDEE
Sbjct: 241 PPPRDAVKSLVVSKKRRPESMDQAAWPPSSGKTTASNGALQVLCCNYDDEE 291
>Os01g0588700 Protein of unknown function DUF572 family protein
Length = 330
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 127/173 (73%), Gaps = 8/173 (4%)
Query: 1 MAERKVINKHYPDDFDPSKIPRRRQHKKQMV-VRMMLPMTVRCAACGEYIGRGTKFNSRK 59
M ERKV+NK+YP DFDPSKIPRRRQ K Q + VRMMLPM++RC CG YI +GTKFNSRK
Sbjct: 1 MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 60
Query: 60 EDVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATRPSYEPWPXXXXXX 119
EDV GE+YLG +Q+FRFY +C++CSAEI F+TDP ++ Y +ESGA+R ++EPW
Sbjct: 61 EDVEGEKYLG-IQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASR-NFEPWREEDEVA 118
Query: 120 -----XXXXXXXXDAMTALEGRCRDARREMGVDAALEEMRSLKSRRAGVTPEQ 167
DAM ALE R D++++M + AALEEMRS+KSR AGVT +Q
Sbjct: 119 DREKRKRDEEEMGDAMRALENRAMDSKQDMDILAALEEMRSMKSRHAGVTVDQ 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,724,362
Number of extensions: 247710
Number of successful extensions: 594
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)