BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0588000 Os01g0588000|AK109917
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0588000 HSP20-like chaperone domain containing protein 295 3e-80
Os05g0592000 91 1e-18
Os01g0587500 HSP20-like chaperone domain containing protein 84 1e-16
>Os01g0588000 HSP20-like chaperone domain containing protein
Length = 269
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 170/269 (63%), Positives = 170/269 (63%)
Query: 1 MAEQQQQQRDGDFEPVYEWLDAGAHYLLRVNVPEFKKEELQVHVDPAGRLTVRGQHGGLR 60
MAEQQQQQRDGDFEPVYEWLDAGAHYLLRVNVPEFKKEELQVHVDPAGRLTVRGQHGGLR
Sbjct: 1 MAEQQQQQRDGDFEPVYEWLDAGAHYLLRVNVPEFKKEELQVHVDPAGRLTVRGQHGGLR 60
Query: 61 LNKVFQLPPTCNLDAITGRLEASVLVLTVXXXXXXXXXXXXXXXXXNQEEEKETKKADEH 120
LNKVFQLPPTCNLDAITGRLEASVLVLTV NQEEEKETKKADEH
Sbjct: 61 LNKVFQLPPTCNLDAITGRLEASVLVLTVPKKPATTAAAAALPPKANQEEEKETKKADEH 120
Query: 121 DVAGKXXXXXXKTDSDQSERRTQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
DVAGK KTDSDQSERRTQLS
Sbjct: 121 DVAGKPPPPPPKTDSDQSERRTQLSAREKKEEPPKATAPAAAPPQPAARERHDEEEKARA 180
Query: 181 XXXXXLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWWKERAAEEGMKLAEAI 240
LS WWKERAAEEGMKLAEAI
Sbjct: 181 EHKARLSREADRRIEAARARLAAQQAASRPAPAPAPEPEKTAAWWKERAAEEGMKLAEAI 240
Query: 241 GKNKEVVATAVAAFALGVFVSTKLFSRNN 269
GKNKEVVATAVAAFALGVFVSTKLFSRNN
Sbjct: 241 GKNKEVVATAVAAFALGVFVSTKLFSRNN 269
>Os05g0592000
Length = 314
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 8 QRDGDFEPVYEWLDAGAHYLLRVNVPEFKKEELQVHVDPAGRLTVRGQHGG------LRL 61
Q+D + +P +EWLD ++LLR+ + FKKE+ +V VD G+LTVRGQ R
Sbjct: 22 QKDEELDPKFEWLDNANNFLLRLYLTGFKKEDFRVQVDGTGKLTVRGQRPAAGSKHNTRF 81
Query: 62 NKVFQLPPTCNLDAITGRLEASVLVLTV 89
+KVFQLP N+D ITGR EASVL +TV
Sbjct: 82 HKVFQLPSNANIDDITGRFEASVLTITV 109
>Os01g0587500 HSP20-like chaperone domain containing protein
Length = 172
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 2 AEQQQQQRDGDFEPVYEWLDAGAHYLLRVNVPEFKKEELQVHVDPAGRLTVRGQH--GGL 59
A + + RD D +P +W D A Y+ R+++ F+KEE +V VD AGR+TVRGQ G +
Sbjct: 16 AAAEVEPRDVDLQPEVKWHDGAAGYVARLDLAGFRKEEFRVQVDGAGRVTVRGQRPAGHV 75
Query: 60 RLNKVFQLPPTCNLDAITGRLEASVLVLTV 89
RL++ FQLPP ++D I R + + L LTV
Sbjct: 76 RLHREFQLPPAADVDRIAARFDGATLCLTV 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,239,884
Number of extensions: 161605
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 4
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)