BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0566100 Os01g0566100|AK065173
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0566100  Conserved hypothetical protein                      731   0.0  
Os06g0142600  Conserved hypothetical protein                      509   e-144

>Os01g0566100 Conserved hypothetical protein
          Length = 396

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/377 (94%), Positives = 355/377 (94%)

Query: 20  PLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFXXXXXXXXXXXXXXXXXXXXXX 79
           PLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRF                      
Sbjct: 20  PLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFSGGGGALASARGSLARSTSAAS 79

Query: 80  QSQVYGCDMPLFEPFNVPSNGPGQSVEKMNSNSVNRQINGSRKDSGMLSTQPKGIDKYGS 139
           QSQVYGCDMPLFEPFNVPSNGPGQSVEKMNSNSVNRQINGSRKDSGMLSTQPKGIDKYGS
Sbjct: 80  QSQVYGCDMPLFEPFNVPSNGPGQSVEKMNSNSVNRQINGSRKDSGMLSTQPKGIDKYGS 139

Query: 140 GSRAECAPQQRVEKGIKSSSGRKLADDDEFIVPSVFSARFPQYSTKERAGVQEESTPLVA 199
           GSRAECAPQQRVEKGIKSSSGRKLADDDEFIVPSVFSARFPQYSTKERAGVQEESTPLVA
Sbjct: 140 GSRAECAPQQRVEKGIKSSSGRKLADDDEFIVPSVFSARFPQYSTKERAGVQEESTPLVA 199

Query: 200 LSPHKSPPAVSKSPTKCYNTVSKNLERINVSDVKSRGSQKDKETGPAQTLKNVEVEHFSS 259
           LSPHKSPPAVSKSPTKCYNTVSKNLERINVSDVKSRGSQKDKETGPAQTLKNVEVEHFSS
Sbjct: 200 LSPHKSPPAVSKSPTKCYNTVSKNLERINVSDVKSRGSQKDKETGPAQTLKNVEVEHFSS 259

Query: 260 FEASKDMFGSKHAKVCPKTGTINDLDEPHLENSEHQATSRNGSSVKFQNPPVRRNTISAK 319
           FEASKDMFGSKHAKVCPKTGTINDLDEPHLENSEHQATSRNGSSVKFQNPPVRRNTISAK
Sbjct: 260 FEASKDMFGSKHAKVCPKTGTINDLDEPHLENSEHQATSRNGSSVKFQNPPVRRNTISAK 319

Query: 320 PSPGIENTNGHCNLPQGGLKEAGTKRKRLEAQDNAEKIDDLSDSSVECITAWEISPDEIV 379
           PSPGIENTNGHCNLPQGGLKEAGTKRKRLEAQDNAEKIDDLSDSSVECITAWEISPDEIV
Sbjct: 320 PSPGIENTNGHCNLPQGGLKEAGTKRKRLEAQDNAEKIDDLSDSSVECITAWEISPDEIV 379

Query: 380 GAIGAKHFWKARRAIIK 396
           GAIGAKHFWKARRAIIK
Sbjct: 380 GAIGAKHFWKARRAIIK 396



>Os06g0142600 Conserved hypothetical protein
          Length = 416

 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/398 (67%), Positives = 301/398 (75%), Gaps = 24/398 (6%)

Query: 20  PLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFXXXXXXXXXXXX---XXXXXXX 76
           PLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRF                      
Sbjct: 22  PLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFSGGGGGGGVGGSPAHSTSAASQ 81

Query: 77  XXXQSQVYGCDMPLFEPFNVPSNGPGQSVEKMNSNSVNRQINGSRKDSGMLSTQPKGIDK 136
              QSQVYG D  LF+PFNVPSN PG S EK+NS+ +N++I+GSRK+ GMLS+Q KG+D 
Sbjct: 82  SQSQSQVYGRDSSLFQPFNVPSNRPGHSTEKINSDKINKKISGSRKELGMLSSQTKGMDI 141

Query: 137 YGSGSRAECAPQQRVEKGIKSSSGRKLADDDEFIVPSVFSARFPQYSTKERAGVQEESTP 196
           Y S S AE APQ+R E  IKSSSG++LADDDEF+VPSVF++RFPQYST+E AGVQ++STP
Sbjct: 142 YASRSTAE-APQRRAENTIKSSSGKRLADDDEFMVPSVFNSRFPQYSTQENAGVQDQSTP 200

Query: 197 LVALSPHKSPPAVSKSPTKCYNTVSKNLERINVSDVKSRGSQKDKETGPAQTLKNVEVEH 256
           LVA +PHKSP  VSKS TKCYNTVSK LERI+VSDVKSR   KDKE   AQT KNVEVE 
Sbjct: 201 LVAANPHKSPSTVSKSSTKCYNTVSKKLERIHVSDVKSRTPLKDKEMEAAQTSKNVEVEK 260

Query: 257 FSSFEASKDMFGSKHAKVCP---KTGTINDLDEPHLENSEHQATSRNGSSVKFQNPPVRR 313
            SSF ASKDMF S+HAKV P   KTG IND DEPH  NS HQATSRNG S+KFQNPP+RR
Sbjct: 261 SSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSGHQATSRNGGSMKFQNPPMRR 320

Query: 314 NTISAKPSPGIENTNGHCNLPQGGLKEAGTKRKRLEAQDNAEK---------------ID 358
           N IS+ PS   ENT+ H NLPQGG++E GTKRKRL  Q +AEK               ID
Sbjct: 321 NEISSNPSS--ENTDRHYNLPQGGIEETGTKRKRLLEQHDAEKSDDVSRLLEQHDAENID 378

Query: 359 DLSDSSVECITAWEISPDEIVGAIGAKHFWKARRAIIK 396
           D+SDSSVECIT WEISPD+IVGAIG KHFWKARRAI+K
Sbjct: 379 DVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIMK 416



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,323,307
Number of extensions: 547867
Number of successful extensions: 1145
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)