BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0559000 Os01g0559000|AK061456
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0559000  Protein of unknown function DUF1000 family pro...   429   e-121
Os03g0795500  Protein of unknown function DUF1000 family pro...    64   5e-11

>Os01g0559000 Protein of unknown function DUF1000 family protein
          Length = 204

 Score =  429 bits (1103), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MACLHDHSCEDHNCAADWSLFNHIDVPKVVALNESVAGSVKSVFKPWEQRLDTSGGFLES 60
           MACLHDHSCEDHNCAADWSLFNHIDVPKVVALNESVAGSVKSVFKPWEQRLDTSGGFLES
Sbjct: 1   MACLHDHSCEDHNCAADWSLFNHIDVPKVVALNESVAGSVKSVFKPWEQRLDTSGGFLES 60

Query: 61  NEGDPELLVFIPFTSDVKIKSISVVGGADGTSPSRMRAFINREGIDFNDAQNMQPVQEWE 120
           NEGDPELLVFIPFTSDVKIKSISVVGGADGTSPSRMRAFINREGIDFNDAQNMQPVQEWE
Sbjct: 61  NEGDPELLVFIPFTSDVKIKSISVVGGADGTSPSRMRAFINREGIDFNDAQNMQPVQEWE 120

Query: 121 LAENLQGVLEYQTRYSRFQGVANLTLHFPENFGGDTTKIYYIGLRGEATQNKRDVVATIV 180
           LAENLQGVLEYQTRYSRFQGVANLTLHFPENFGGDTTKIYYIGLRGEATQNKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSRFQGVANLTLHFPENFGGDTTKIYYIGLRGEATQNKRDVVATIV 180

Query: 181 YEIMPNPSDHKTKSETGGGFSHVE 204
           YEIMPNPSDHKTKSETGGGFSHVE
Sbjct: 181 YEIMPNPSDHKTKSETGGGFSHVE 204



>Os03g0795500 Protein of unknown function DUF1000 family protein
          Length = 191

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 20  LFNHIDVPKVVALNESVAGSVKSVFKPWEQRLDTSGGFLESNEGDPELLVFIPFTSDVKI 79
           L + ID   V  LN+  A S+ +  K  +   D  G +L S + D +LL+ IPF   VK+
Sbjct: 30  LVDFIDWSGVECLNQDPAHSIVNALK--QGYRDDEGLYLAS-DSDEQLLIHIPFMQVVKL 86

Query: 80  KSISVVGGADGTSPSRMRAFINREGIDFNDAQNMQPVQEWELAEN-LQGVLEYQTRYSRF 138
            S ++  G +   P  ++ F N+E + F++  +  P    +L+ N L      Q +Y +F
Sbjct: 87  HS-ALFKGPEEDGPKTIKLFCNKEHMGFSNVNDYPPSDSLDLSSNHLSESKPMQLKYVKF 145

Query: 139 QGVANLTLHFPEN-FGGDTTKIYYIGLRGEA--TQNKRDV 175
           Q V +LT+   +N  G D +KI  I L G    T N +D+
Sbjct: 146 QNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMKDL 185



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,589,802
Number of extensions: 304898
Number of successful extensions: 539
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)