Os01g0559000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1000 family protein.
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Os01g0559000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1000 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.35 | 0.222 | 12.4 | -0.433 | 0.587 | -0.3 | -0.431 | 0.643 | -0.0317 | 21.6 | 89 | 216 | -- | -- |
| 23.23 | 0.224 | 12.4 | -0.407 | 0.595 | -0.265 | -0.429 | -- | -0.0231 | 21.6 | 88.39 | 222 | -- | -- |
| 23.04 | 0.224 | 12.4 | -0.417 | 0.586 | -0.303 | -- | 0.611 | -0.0302 | 21.7 | 88.91 | 222 | -- | -- |
| 23.84 | 0.227 | 12.4 | -0.393 | 0.593 | -0.262 | -- | -- | -0.0198 | 21.7 | 87.53 | 205 | -- | -- |
| 34.27 | 0.273 | 12.4 | -0.469 | -- | -0.697 | -- | 0.725 | -0.0531 | -- | 78.36 | 735 | -- | -- |
| 24.72 | 0.233 | 12.4 | -0.439 | 0.638 | -- | -0.469 | -- | 0.0228 | 20.9 | -- | -- | -- | -- |
| 25.46 | 0.236 | 12.4 | -0.423 | 0.639 | -- | -- | -- | 0.0229 | 20.9 | -- | -- | -- | -- |
| 35.58 | 0.278 | 12.4 | -0.379 | -- | -0.677 | -- | -- | -0.0543 | -- | 79.46 | 726 | -- | -- |
| 27.81 | 0.246 | 12.4 | -- | 0.584 | -0.312 | -- | -- | 0.0137 | 21.9 | 86.89 | 222 | -- | -- |
| 48.75 | 0.326 | 12.3 | -0.423 | -- | -- | -- | -- | 0.0184 | -- | -- | -- | -- | -- |
| 30.17 | 0.257 | 12.3 | -- | 0.64 | -- | -- | -- | 0.07 | 20.8 | -- | -- | -- | -- |
| 39.15 | 0.291 | 12.3 | -- | -- | -0.715 | -- | -- | -0.0294 | -- | 82 | 722 | -- | -- |
| 53.46 | 0.341 | 12.3 | -- | -- | -- | -- | -- | 0.0653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.32 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 3 | 21.32 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 8 | 21.39 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 12 | 21.47 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 16 | 21.51 | temperature | 25.0 | 270 | > th | dose independent | sin | 10 | NA |
| 23 | 21.57 | temperature | 25.0 | 270 | < th | dose independent | sin | 10 | NA |
| 30 | 21.62 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 35 | 21.65 | temperature | 20.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 37 | 21.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 53 | 21.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 54 | 21.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 55 | 21.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 59 | 21.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 105 | 21.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 165 | 22.02 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 178 | 22.05 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 203 | 22.07 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 216 | 22.08 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 220 | 22.09 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 244 | 22.12 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 254 | 22.12 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 256 | 22.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 257 | 22.12 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 311 | 22.17 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 342 | 22.19 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 344 | 22.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 352 | 22.20 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 368 | 22.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 381 | 22.21 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 397 | 22.22 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 17 |
| 408 | 22.23 | humidity | 90.0 | 270 | > th | dose independent | sin | 8 | NA |
| 413 | 22.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 416 | 22.23 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 20 |
| 423 | 22.23 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 435 | 22.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 445 | 22.25 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 446 | 22.25 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 448 | 22.25 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 460 | 22.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 469 | 22.26 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 480 | 22.26 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 493 | 22.27 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 511 | 22.28 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 555 | 22.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 559 | 22.30 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 562 | 22.30 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 573 | 22.31 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 608 | 22.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 635 | 22.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 651 | 22.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 652 | 22.34 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 655 | 22.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 674 | 22.35 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 687 | 22.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 716 | 22.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 750 | 22.36 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 761 | 22.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 769 | 22.37 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 780 | 22.37 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 11 |
| 782 | 22.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 789 | 22.38 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 9 |
| 796 | 22.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 867 | 22.39 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 911 | 22.40 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 977 | 22.42 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |