BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0551100 Os01g0551100|AK067932
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0551100 Ribonuclease III domain containing protein 407 e-114
Os05g0271300 Ribonuclease III domain containing protein 99 3e-21
Os01g0909200 DEAD/DEAH box helicase, N-terminal domain cont... 67 1e-11
Os03g0583900 DEAD/DEAH box helicase, N-terminal domain cont... 64 9e-11
>Os01g0551100 Ribonuclease III domain containing protein
Length = 256
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/256 (81%), Positives = 208/256 (81%)
Query: 1 MQQQQHPAPGXXXXXXXXXXXXXXXXXLGGYSFRDGGALLLEDALTHSVHPRDEAGGRAR 60
MQQQQHPAPG LGGYSFRDGGALLLEDALTHSVHPRDEAGGRAR
Sbjct: 1 MQQQQHPAPGAEFVADRDAARAEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRAR 60
Query: 61 HQRXXXXXXXXXXXXXXTIFYRDDPGLDQGDLTVLRSANVSTQKXXXXXXXXXXXXXXXX 120
HQR TIFYRDDPGLDQGDLTVLRSANVSTQK
Sbjct: 61 HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRR 120
Query: 121 XNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKL 180
NCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKL
Sbjct: 121 YNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKL 180
Query: 181 LCEPIITKKALLEDPESMLNELGGEHREDLEIKILAWRKVANVVDDGREQAITTSGLGNG 240
LCEPIITKKALLEDPESMLNELGGEHREDLEIKILAWRKVANVVDDGREQAITTSGLGNG
Sbjct: 181 LCEPIITKKALLEDPESMLNELGGEHREDLEIKILAWRKVANVVDDGREQAITTSGLGNG 240
Query: 241 SEDEVGKLRTIRIEEA 256
SEDEVGKLRTIRIEEA
Sbjct: 241 SEDEVGKLRTIRIEEA 256
>Os05g0271300 Ribonuclease III domain containing protein
Length = 344
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 119/296 (40%), Gaps = 83/296 (28%)
Query: 31 YSFRDGGALLLEDALTHSVHPRDEAGGRARHQRXXXXXXXXXXXXXXTIFYRDDPGLDQG 90
Y FRDG LLE+ALTH D +QR Y +P L G
Sbjct: 40 YQFRDGR--LLEEALTHQSFADDAVS----YQRLEFVGDSALGLAFSNFLYLTNPTLGPG 93
Query: 91 DLTVLRSANVSTQKXXXXXXXXXXXXXXXXXNCAPQDHEVSRFTKSVEG---------PY 141
L+ LR+AN+ST+K NC D V +F ++V+ PY
Sbjct: 94 PLSTLRAANISTEKLARVAVRHDLYPLLRR-NCPRLDLLVGQFIETVKQEPEDDLSTVPY 152
Query: 142 SGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQK------------------------- 176
G ++ P+VLADIVEAI AVY+D K DLE L K
Sbjct: 153 GGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDWIN 212
Query: 177 --------VAKLLCEPIITKKALLEDPESMLNELGGEHREDLEIKILAWRK----VANVV 224
V + L EPIIT + + E P +ML+EL +H + + K W+K V NV
Sbjct: 213 NFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQFK--TWQKGGMTVVNVF 270
Query: 225 DDGR----------------------------EQAITTSGLGNGSEDEVGKLRTIR 252
G ++ + T+G+GNG DE+G+LR +
Sbjct: 271 VAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECK 326
>Os01g0909200 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1651
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 30 GYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRXXXXXXXXXXXXXXTIFYRDDPGLDQ 89
GYSF G LL +ALTH + E G + ++R + ++
Sbjct: 1249 GYSFSVKG--LLVEALTHP--SQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNE 1304
Query: 90 GDLTVLRSANVSTQKXXXXXXXXXXXXXXXXXNCAPQDHEVSRFTKSVEGPYSGDPIE-- 147
G+LT LRSA+V+ + + D +++ + +EG S D +E
Sbjct: 1305 GELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLD-QITEYVNRLEGS-SMDKVELL 1362
Query: 148 ------GPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNE 201
GP+VL DIVE+I GA+ LD+KLDL+V+ + + L PI+T + L P L E
Sbjct: 1363 SDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIE 1422
Query: 202 LGGEH 206
G+H
Sbjct: 1423 WCGKH 1427
>Os03g0583900 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1410
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 9/178 (5%)
Query: 30 GYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRXXXXXXXXXXXXXXTIFYRDDPGLDQ 89
GY F D +LLL +ALTH + +G + +QR +Y P
Sbjct: 1169 GYKFND--SLLLLEALTHGSY--QTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTP 1224
Query: 90 GDLTVLRSANVSTQKXXXXXXXXXXXXXXXXXNCA---PQDHEVSRFTKSVEGPYSGDP- 145
LT LRSA+V+ + + + F +S GP G
Sbjct: 1225 ELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEA 1284
Query: 146 -IEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNEL 202
I P+VL D++E+I GA+YLDSK D EV+ + K L EP+ T + + DP L E
Sbjct: 1285 GIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 1342
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,509,214
Number of extensions: 268703
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 4
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)