BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0541600 Os01g0541600|Os01g0541600
         (393 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0541600  Conserved hypothetical protein                      653   0.0  
Os01g0531000  Conserved hypothetical protein                      432   e-121

>Os01g0541600 Conserved hypothetical protein
          Length = 393

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/374 (90%), Positives = 337/374 (90%)

Query: 20  NQAVSLREESSGKTRADAASLLRVQHLQRLAAWAGGEXXXXXXXXXXXXXXXXXXXXXXI 79
           NQAVSLREESSGKTRADAASLLRVQHLQRLAAWAGGE                      I
Sbjct: 20  NQAVSLREESSGKTRADAASLLRVQHLQRLAAWAGGEARVGPLGALLGRRLAANAEAAGI 79

Query: 80  PLAASTFLCQRCETVLQPGFNCTXXXXXXXXXXXXXXXLNTCQNSISYLCHFCGDQNLIR 139
           PLAASTFLCQRCETVLQPGFNCT               LNTCQNSISYLCHFCGDQNLIR
Sbjct: 80  PLAASTFLCQRCETVLQPGFNCTIRIKNNKRKAKRRKKLNTCQNSISYLCHFCGDQNLIR 139

Query: 140 GSGKNIMKGLLSLRKPVGMDVTSIKLKGDINNKRLVTIKEGLEYSQGAVSQLESTSGLKQ 199
           GSGKNIMKGLLSLRKPVGMDVTSIKLKGDINNKRLVTIKEGLEYSQGAVSQLESTSGLKQ
Sbjct: 140 GSGKNIMKGLLSLRKPVGMDVTSIKLKGDINNKRLVTIKEGLEYSQGAVSQLESTSGLKQ 199

Query: 200 RNLVKNEYEESPVPNFLDESMEKEVASSSVELNQSASATDEENVSQKIVVTITNEKSTHE 259
           RNLVKNEYEESPVPNFLDESMEKEVASSSVELNQSASATDEENVSQKIVVTITNEKSTHE
Sbjct: 200 RNLVKNEYEESPVPNFLDESMEKEVASSSVELNQSASATDEENVSQKIVVTITNEKSTHE 259

Query: 260 TEPVSANKIAICQPDVPSKAEFSVGSSFVTPRKNKVVDVTDHKDSAELLKTRSIQNKKAE 319
           TEPVSANKIAICQPDVPSKAEFSVGSSFVTPRKNKVVDVTDHKDSAELLKTRSIQNKKAE
Sbjct: 260 TEPVSANKIAICQPDVPSKAEFSVGSSFVTPRKNKVVDVTDHKDSAELLKTRSIQNKKAE 319

Query: 320 MPSSVTGKAPTMPTKSAPNDSMKNKPVAIGSAQMSGSSRKRARKGWTTLKQIAEKEELER 379
           MPSSVTGKAPTMPTKSAPNDSMKNKPVAIGSAQMSGSSRKRARKGWTTLKQIAEKEELER
Sbjct: 320 MPSSVTGKAPTMPTKSAPNDSMKNKPVAIGSAQMSGSSRKRARKGWTTLKQIAEKEELER 379

Query: 380 KEKMGNFVIPFFMQ 393
           KEKMGNFVIPFFMQ
Sbjct: 380 KEKMGNFVIPFFMQ 393



>Os01g0531000 Conserved hypothetical protein
          Length = 248

 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/248 (91%), Positives = 232/248 (93%)

Query: 146 MKGLLSLRKPVGMDVTSIKLKGDINNKRLVTIKEGLEYSQGAVSQLESTSGLKQRNLVKN 205
           MKGLLS RKPVGMDVTSIKLKGD NNKRLVTIKEG EYSQ AVSQLESTSGLKQ+NL KN
Sbjct: 1   MKGLLSSRKPVGMDVTSIKLKGDSNNKRLVTIKEGFEYSQAAVSQLESTSGLKQQNLEKN 60

Query: 206 EYEESPVPNFLDESMEKEVASSSVELNQSASATDEENVSQKIVVTITNEKSTHETEPVSA 265
           EYEESPVPN LDESMEKEVA SSVELNQSASATD+ENVSQKIVVTIT+EK  HETEPVSA
Sbjct: 61  EYEESPVPNLLDESMEKEVACSSVELNQSASATDQENVSQKIVVTITSEKGMHETEPVSA 120

Query: 266 NKIAICQPDVPSKAEFSVGSSFVTPRKNKVVDVTDHKDSAELLKTRSIQNKKAEMPSSVT 325
           NKIAICQPD PSKAEF VGSSFVTPRKNK+VDVTDHKDSAEL+KTRSIQNKK EMPSSVT
Sbjct: 121 NKIAICQPDFPSKAEFPVGSSFVTPRKNKLVDVTDHKDSAELVKTRSIQNKKGEMPSSVT 180

Query: 326 GKAPTMPTKSAPNDSMKNKPVAIGSAQMSGSSRKRARKGWTTLKQIAEKEELERKEKMGN 385
           GKAPTMPTKSAP D +KNK VA GSAQMSGSSRKRARKGWTTLKQIAEKEELERKEKMGN
Sbjct: 181 GKAPTMPTKSAPKDRVKNKSVASGSAQMSGSSRKRARKGWTTLKQIAEKEELERKEKMGN 240

Query: 386 FVIPFFMQ 393
           FVIPFFMQ
Sbjct: 241 FVIPFFMQ 248



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,298,827
Number of extensions: 366593
Number of successful extensions: 1160
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)