Os01g0541600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0541600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.9 | 0.396 | 9.12 | -0.649 | 0.327 | 0.651 | -0.49 | 0.361 | -0.161 | 4.53 | 20.8 | 1241 | -- | -- |
| 70.9 | 0.392 | 9.13 | -0.702 | 0.327 | 0.581 | -0.508 | -- | -0.183 | 4.69 | 21.2 | 1192 | -- | -- |
| 71.44 | 0.394 | 9.12 | -0.658 | 0.325 | 0.634 | -- | 0.272 | -0.162 | 4.27 | 20.9 | 1225 | -- | -- |
| 71.47 | 0.394 | 9.13 | -0.704 | 0.322 | 0.586 | -- | -- | -0.183 | 4.3 | 21.25 | 1206 | -- | -- |
| 76.92 | 0.408 | 9.13 | -0.638 | -- | 0.626 | -- | 0.292 | -0.165 | -- | 21.2 | 1140 | -- | -- |
| 80.77 | 0.421 | 9.1 | -0.471 | 0.361 | -- | -0.51 | -- | -0.026 | 4.18 | -- | -- | -- | -- |
| 81.45 | 0.423 | 9.1 | -0.466 | 0.356 | -- | -- | -- | -0.0232 | 3.86 | -- | -- | -- | -- |
| 76.97 | 0.409 | 9.14 | -0.698 | -- | 0.609 | -- | -- | -0.182 | -- | 21.3 | 1140 | -- | -- |
| 82.13 | 0.422 | 9.11 | -- | 0.328 | 0.334 | -- | -- | -0.0655 | 3.91 | 22.4 | 1007 | -- | -- |
| 88.43 | 0.439 | 9.1 | -0.451 | -- | -- | -- | -- | -0.0137 | -- | -- | -- | -- | -- |
| 87.18 | 0.437 | 9.08 | -- | 0.347 | -- | -- | -- | 0.0287 | 3.88 | -- | -- | -- | -- |
| 87.45 | 0.436 | 9.11 | -- | -- | 0.368 | -- | -- | -0.0775 | -- | 22.38 | 1077 | -- | -- |
| 93.81 | 0.452 | 9.09 | -- | -- | -- | -- | -- | 0.0364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 6 | 69.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 10 | 69.56 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 13 | 69.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 14 | 69.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 48 | 70.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 65 | 70.79 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 75 | 70.94 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 82 | 71.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 83 | 71.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 88 | 71.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 90 | 71.14 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 101 | 71.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 104 | 71.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 106 | 71.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 107 | 71.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 111 | 71.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 115 | 71.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 128 | 71.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 141 | 71.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 163 | 71.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 165 | 71.44 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 169 | 71.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 174 | 71.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 181 | 71.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 188 | 71.47 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 192 | 71.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 198 | 71.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 216 | 71.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 229 | 71.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 235 | 71.52 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 319 | 71.63 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 323 | 71.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 331 | 71.64 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 10 |
| 343 | 71.65 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 352 | 71.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 382 | 71.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 388 | 71.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 398 | 71.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 470 | 71.77 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 22 |
| 485 | 71.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 536 | 71.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 537 | 71.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 540 | 71.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 591 | 71.86 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 606 | 71.87 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 22 |
| 622 | 71.88 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 651 | 71.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 668 | 71.92 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 20 |
| 709 | 71.95 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 735 | 71.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 745 | 71.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 749 | 71.98 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 783 | 71.99 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 943 | 72.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 977 | 72.11 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |