BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0541600 Os01g0541600|Os01g0541600
         (393 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41270.1  | chr5:16507797-16508813 FORWARD LENGTH=259           64   1e-10

>AT5G41270.1 | chr5:16507797-16508813 FORWARD LENGTH=259
          Length = 258

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 39  SLLRVQHLQRLAAWAG-GEXXXXXXXXXXXXXXXXXXXXXXIPLAASTFLCQRCETVLQP 97
           S+LR +HL+ LA W+  G+                      I        CQRCET+L+P
Sbjct: 22  SVLRHEHLKNLALWSSTGDTPIPSLASLLGRRLAADTESTGITTDPDLVSCQRCETILKP 81

Query: 98  GFNCTXXXXXXXXXXXXXXXL-----NTC--QNSISYLCHFCGDQNLIRGSGKNIMKGLL 150
           GFNC                      N C  QN++ Y C+FC  +NL RG+ K  MK L 
Sbjct: 82  GFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNFCSHRNLKRGTAKGQMKELY 141

Query: 151 SLR 153
             +
Sbjct: 142 PFK 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,834,598
Number of extensions: 259437
Number of successful extensions: 957
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)