BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0530300 Os01g0530300|AK111105
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0530300  Hypothetical protein                                356   8e-99
Os04g0347900  Conserved hypothetical protein                       80   8e-16

>Os01g0530300 Hypothetical protein
          Length = 204

 Score =  356 bits (913), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 174/204 (85%), Positives = 174/204 (85%)

Query: 1   MATQPRXXXXXXXXXXXXXXXXVSYLQACVELDDWWLXXXXXXXXXXXXXXSNTTTSRAG 60
           MATQPR                VSYLQACVELDDWWL              SNTTTSRAG
Sbjct: 1   MATQPRAGDGAAAAAAAKEAPAVSYLQACVELDDWWLERVEGEEGKVRVVGSNTTTSRAG 60

Query: 61  RRFTSASIKTRHASGDLETEDGIIIMIARPPNISKMHLNGFPDEVSKHFSLGFPVQWENI 120
           RRFTSASIKTRHASGDLETEDGIIIMIARPPNISKMHLNGFPDEVSKHFSLGFPVQWENI
Sbjct: 61  RRFTSASIKTRHASGDLETEDGIIIMIARPPNISKMHLNGFPDEVSKHFSLGFPVQWENI 120

Query: 121 INANMAEMNKQPQSPLKSTEYYIEKFLRGNLKYSMGLFSWDGLNIYQGSRSDADRFPSER 180
           INANMAEMNKQPQSPLKSTEYYIEKFLRGNLKYSMGLFSWDGLNIYQGSRSDADRFPSER
Sbjct: 121 INANMAEMNKQPQSPLKSTEYYIEKFLRGNLKYSMGLFSWDGLNIYQGSRSDADRFPSER 180

Query: 181 LSNSSNGRPTVEDPTANTDCNVNF 204
           LSNSSNGRPTVEDPTANTDCNVNF
Sbjct: 181 LSNSSNGRPTVEDPTANTDCNVNF 204



>Os04g0347900 Conserved hypothetical protein
          Length = 633

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 29  CVELDDWWLXXXXXXXXXXXXXXSNTTTSRAGRRFTSASIKTRHASGDLETEDGIIIMIA 88
           CVEL DWWL               +T  +     FTSA I  RH +  LE ED II++I 
Sbjct: 68  CVELFDWWLKRVEGDDRKVRIA-GHTERNHKPHLFTSAPIVKRHKACMLEAEDSIIVLID 126

Query: 89  RPPNISKMHLNGFPDEVSKHFSLGFPVQWENIINANMAEMNKQPQSPLKSTEYYIEKFLR 148
            P ++S+M  NG+  EV + F  GFP  WE+    +    +    S    T++Y+E+F  
Sbjct: 127 GPLDLSQMENNGYSLEVCEKFMTGFPCLWESYNLGSQQSCSYTSISRDGRTKFYLERFQI 186

Query: 149 GNLKYSMGLFSWDGLNIYQGSRS----DADRFPSERLSNSSNGRPTVEDPTANTD 199
           GN    +G  S    N+   SRS    DAD F  E+ S  SN +P  E+ T + D
Sbjct: 187 GNFIDKVG--SSFLANLLNNSRSSSGNDADSF--EKGSYLSNKKPRFEEYTCDLD 237



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,156,806
Number of extensions: 230059
Number of successful extensions: 431
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)