BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0507300 Os01g0507300|AK099867
         (291 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0507300  Protein of unknown function DUF92, transmembra...   436   e-123
Os01g0178200  Protein of unknown function DUF92, transmembra...   262   2e-70

>Os01g0507300 Protein of unknown function DUF92, transmembrane family protein
          Length = 291

 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/291 (76%), Positives = 224/291 (76%)

Query: 1   MGIPXXXXXXXXXXXXXXXXXXXXXXXXXXSLDGSGGAAGFVVMAIHLACGYRYGALVLA 60
           MGIP                          SLDGSGGAAGFVVMAIHLACGYRYGALVLA
Sbjct: 1   MGIPAASVAARTAVGAALAAVIAARAVRRRSLDGSGGAAGFVVMAIHLACGYRYGALVLA 60

Query: 61  FFFTSSKATKIGADRKRRIEDDFKEGGQRNWIQVLANSXXXXXXXXXXXXMTGGQDQCLD 120
           FFFTSSKATKIGADRKRRIEDDFKEGGQRNWIQVLANS            MTGGQDQCLD
Sbjct: 61  FFFTSSKATKIGADRKRRIEDDFKEGGQRNWIQVLANSLIATILVIILATMTGGQDQCLD 120

Query: 121 SHESKVITXXXXXXXXHYCCCNGDTWSSELGVLSDEQPRLITTLKPVRKGTNXXXXXXXX 180
           SHESKVIT        HYCCCNGDTWSSELGVLSDEQPRLITTLKPVRKGTN        
Sbjct: 121 SHESKVITGIIGGIIGHYCCCNGDTWSSELGVLSDEQPRLITTLKPVRKGTNGGVTLQGL 180

Query: 181 XXXXXXXXXXXXXFVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDSVLGATLQFS 240
                        FVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDSVLGATLQFS
Sbjct: 181 LAATAGGLIIGLTFVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDSVLGATLQFS 240

Query: 241 GYCSVRKKVVSKRGPTVTKISGMTILDNDAVNAVSVLLTTAVTAYACIRIF 291
           GYCSVRKKVVSKRGPTVTKISGMTILDNDAVNAVSVLLTTAVTAYACIRIF
Sbjct: 241 GYCSVRKKVVSKRGPTVTKISGMTILDNDAVNAVSVLLTTAVTAYACIRIF 291



>Os01g0178200 Protein of unknown function DUF92, transmembrane family protein
          Length = 333

 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 170/300 (56%), Gaps = 39/300 (13%)

Query: 31  SLDGSGGAAGFVVMAIHLACGYRYGALVLAFFFTSSKATKIGADRKRRIEDDFKEGGQRN 90
           S+D +    G   M  H   GYR+  ++L FFFT+S+ T++G  RKR ++ DFKEGGQRN
Sbjct: 34  SVDSTAVFVGVPAMVAHTVAGYRFAGMLLVFFFTASRMTRVGEKRKRALDPDFKEGGQRN 93

Query: 91  WI---------------------------------------QVLANSXXXXXXXXXXXXM 111
           W                                        QVL+NS            +
Sbjct: 94  WFTFRVEASDFGSDCSRVGECGKSLERQNSYLVHTTLIGRKQVLSNSGIASVLVVLIALV 153

Query: 112 TGGQDQCLDSHESKVITXXXXXXXXHYCCCNGDTWSSELGVLSDEQPRLITTLKPVRKGT 171
           TGG D+CLD+ ES ++T        HY CCNGDTWSSELG+LS  +PR+ITT K VRKGT
Sbjct: 154 TGGSDRCLDTRESSLVTALIGGVIGHYACCNGDTWSSELGILSKAEPRIITTFKRVRKGT 213

Query: 172 NXXXXXXXXXXXXXXXXXXXXXFVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDS 231
           N                     FV +G LT +CS DV  RQLLVIP++  AGL GSLIDS
Sbjct: 214 NGGVTIDGLLAAAAAGFSIGLTFVLLGFLTTQCSSDVFWRQLLVIPLATAAGLCGSLIDS 273

Query: 232 VLGATLQFSGYCSVRKKVVSKRGPTVTKISGMTILDNDAVNAVSVLLTTAVTAYACIRIF 291
           +LGATLQ+SGYCS+RKKVV   GPTVT+ISG  ILDN+ VN VSV LTT +TA AC+ IF
Sbjct: 274 LLGATLQYSGYCSLRKKVVGVDGPTVTRISGRNILDNNGVNVVSVFLTTLITALACVYIF 333



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,204,805
Number of extensions: 223827
Number of successful extensions: 350
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 3
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)