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Os01g0507300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF92, transmembrane family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0204) R2 : 0.0773
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.266 (0.0431) R2dN8 : 0.0998 R2N8 : 0.0773
σ : 0.385
deviance : 68.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.21 0.316 12.1 -0.241 0.272 0.407 -1 -0.102 0.241 18.3 0.12 55 -- --
45.23 0.313 12.1 -0.235 0.277 0.394 -1 -- 0.24 18 0.12 54 -- --
47.54 0.321 12.1 -0.225 0.278 0.401 -- -0.0113 0.241 18.5 0.1794 56 -- --
47.52 0.321 12.1 -0.219 0.267 0.408 -- -- 0.242 18.6 0.1701 56 -- --
50.49 0.331 12.1 -0.288 -- 0.372 -- 0.0757 0.25 -- 0.08511 142 -- --
50.33 0.333 12.1 -0.176 0.521 -- -0.4 -- 0.258 14.4 -- -- -- --
50.86 0.334 12.1 -0.187 0.518 -- -- -- 0.255 14.2 -- -- -- --
49.94 0.329 12.1 -0.222 -- 0.414 -- -- 0.253 -- 0.11 174 -- --
48.82 0.325 12.1 -- 0.273 0.397 -- -- 0.253 18.3 0.18 56 -- --
66.91 0.382 12.1 -0.209 -- -- -- -- 0.243 -- -- -- -- --
51.79 0.337 12.1 -- 0.522 -- -- -- 0.276 14.2 -- -- -- --
51.28 0.334 12.1 -- -- 0.417 -- -- 0.261 -- 0.12 169 -- --
68.06 0.385 12.1 -- -- -- -- -- 0.266 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.29 humidity 70.0 30 < th dose dependent rect. 19 1
15 43.45 humidity 70.0 270 > th dose independent rect. 16 15
16 43.52 humidity 50.0 270 > th dose independent rect. 13 10
17 43.67 humidity 50.0 270 > th dose independent rect. 4 14
19 43.86 humidity 70.0 30 < th dose independent rect. 19 1
44 43.93 temperature 15.0 90 > th dose independent rect. 5 13
53 44.15 temperature 30.0 270 < th dose independent rect. 16 15
56 44.23 radiation 1.0 90 < th dose dependent sin 10 NA
71 44.33 radiation 1.0 30 < th dose independent sin 10 NA
73 44.34 temperature 10.0 720 > th dose dependent rect. 5 2
77 44.41 atmosphere 1015.0 90 < th dose dependent rect. 5 18
86 44.51 wind 9.0 90 < th dose independent rect. 5 13
87 44.52 precipitation 0.1 90 < th dose independent rect. 5 13
88 44.52 precipitation 0.1 90 < th dose dependent rect. 5 13
91 44.55 radiation 10.0 90 < th dose independent rect. 18 11
93 44.56 wind 7.0 90 < th dose independent rect. 18 11
94 44.56 atmosphere 995.0 90 > th dose independent rect. 18 11
96 44.58 temperature 10.0 90 > th dose independent rect. 18 11
97 44.58 humidity 50.0 90 > th dose independent rect. 18 11
102 44.58 atmosphere 1015.0 90 < th dose independent rect. 5 13
104 44.61 wind 9.0 90 < th dose dependent rect. 5 13
106 44.62 radiation 40.0 90 < th dose dependent rect. 18 11
109 44.64 temperature 10.0 90 > th dose dependent rect. 5 18
112 44.68 temperature 10.0 30 > th dose dependent rect. 5 14
116 44.69 radiation 10.0 10 < th dose dependent rect. 19 11
123 44.80 radiation 10.0 90 < th dose independent rect. 5 18
135 44.86 precipitation 0.1 270 < th dose independent rect. 12 11
137 44.86 radiation 10.0 270 < th dose independent rect. 14 18
138 44.86 precipitation 0.1 270 < th dose dependent rect. 12 11
148 44.91 temperature 10.0 270 > th dose dependent rect. 3 17
155 44.94 radiation 30.0 270 < th dose dependent rect. 15 16
158 44.95 humidity 50.0 720 > th dose independent rect. 5 18
159 44.96 radiation 20.0 90 < th dose independent rect. 5 6
167 44.97 humidity 50.0 270 > th dose dependent rect. 15 16
169 44.97 radiation 30.0 270 < th dose dependent rect. 14 18
170 44.98 atmosphere 995.0 90 > th dose independent rect. 5 13
174 44.99 radiation 1.0 30 < th dose independent rect. 19 21
178 45.00 precipitation 0.1 90 < th dose independent rect. 18 11
179 45.00 radiation 40.0 90 < th dose dependent rect. 5 6
180 45.00 precipitation 0.1 90 < th dose dependent rect. 18 11
182 45.02 radiation 10.0 270 < th dose independent rect. 4 4
183 45.02 temperature 10.0 270 > th dose independent rect. 12 11
184 45.02 temperature 10.0 270 > th dose independent rect. 23 13
185 45.02 atmosphere 995.0 270 > th dose independent rect. 23 13
188 45.03 humidity 70.0 720 > th dose independent rect. 19 13
194 45.05 atmosphere 1010.0 270 < th dose independent rect. 4 4
197 45.06 radiation 40.0 90 < th dose independent rect. 5 13
201 45.07 atmosphere 1010.0 720 < th dose independent rect. 5 2
212 45.10 humidity 50.0 270 > th dose independent rect. 23 13
216 45.12 temperature 10.0 90 > th dose dependent rect. 18 11
220 45.14 humidity 50.0 720 > th dose independent rect. 11 6
221 45.14 temperature 30.0 270 < th dose independent rect. 23 14
224 45.15 precipitation 0.1 270 < th dose independent rect. 23 13
227 45.15 precipitation 0.1 270 < th dose dependent rect. 23 13
229 45.15 radiation 1.0 30 < th dose dependent rect. 19 22
232 45.16 radiation 1.0 30 < th dose independent rect. 19 17
243 45.17 atmosphere 1015.0 90 < th dose dependent rect. 5 4
253 45.21 wind 9.0 270 < th dose independent rect. 23 13
266 45.24 atmosphere 1010.0 90 < th dose independent rect. 18 11
269 45.24 atmosphere 995.0 270 > th dose dependent rect. 23 14
271 45.24 radiation 20.0 90 < th dose dependent rect. 5 18
278 45.26 temperature 30.0 30 < th dose independent rect. 19 10
291 45.26 radiation 20.0 270 < th dose dependent rect. 4 4
300 45.27 humidity 50.0 270 > th dose independent rect. 11 22
309 45.29 atmosphere 995.0 270 > th dose dependent rect. 7 8
320 45.31 wind 1.0 270 > th dose independent rect. 7 21
338 45.34 radiation 1.0 30 < th dose dependent rect. 19 17
350 45.36 humidity 50.0 720 > th dose independent rect. 11 13
351 45.36 atmosphere 1015.0 270 < th dose independent rect. 23 13
356 45.37 temperature 15.0 720 > th dose independent rect. 4 3
371 45.40 humidity 50.0 90 > th dose dependent rect. 5 5
394 45.43 atmosphere 1015.0 90 < th dose dependent rect. 5 13
397 45.44 humidity 70.0 270 > th dose independent rect. 4 3
403 45.44 wind 9.0 90 < th dose dependent rect. 5 4
418 45.46 wind 9.0 270 < th dose independent rect. 13 10
430 45.47 radiation 40.0 90 < th dose independent rect. 5 4
431 45.47 wind 1.0 270 > th dose independent rect. 13 10
439 45.47 wind 9.0 90 < th dose dependent rect. 18 11
442 45.48 precipitation 0.1 270 < th dose independent rect. 4 3
447 45.48 wind 9.0 270 < th dose independent rect. 7 21
450 45.48 precipitation 0.1 270 < th dose dependent rect. 4 3
453 45.49 radiation 1.0 90 > th dose independent sin 9 NA
454 45.49 wind 9.0 270 < th dose independent rect. 4 3
457 45.49 temperature 30.0 270 < th dose independent rect. 4 3
458 45.49 humidity 50.0 270 > th dose independent rect. 4 3
460 45.49 atmosphere 995.0 270 > th dose independent rect. 4 3
465 45.49 temperature 30.0 270 < th dose independent rect. 7 8
466 45.49 wind 1.0 720 > th dose independent rect. 8 11
470 45.49 wind 1.0 270 > th dose independent rect. 23 14
473 45.49 temperature 10.0 270 > th dose independent rect. 7 21
474 45.50 radiation 10.0 270 < th dose independent rect. 5 1
498 45.51 temperature 15.0 90 > th dose independent rect. 5 18
521 45.52 temperature 10.0 90 > th dose independent rect. 9 20
533 45.53 wind 9.0 270 < th dose dependent rect. 5 1
536 45.54 precipitation 0.1 270 < th dose independent rect. 5 1
541 45.54 wind 7.0 720 < th dose independent rect. 7 6
542 45.54 temperature 15.0 90 > th dose independent rect. 23 6
548 45.54 temperature 15.0 720 > th dose independent rect. 1 18
549 45.54 precipitation 0.1 90 < th dose independent rect. 5 18
552 45.54 precipitation 0.1 270 < th dose dependent rect. 5 1
555 45.54 precipitation 0.1 90 < th dose dependent rect. 5 18
556 45.55 wind 7.0 270 < th dose independent rect. 5 1
560 45.55 temperature 30.0 270 < th dose independent rect. 5 1
561 45.55 humidity 50.0 270 > th dose independent rect. 5 1
564 45.55 atmosphere 995.0 270 > th dose independent rect. 5 1
574 45.55 temperature 10.0 270 > th dose independent rect. 6 23
577 45.55 radiation 1.0 720 < th dose dependent rect. 23 7
579 45.56 radiation 1.0 270 > th dose independent rect. 4 2
583 45.56 humidity 70.0 720 > th dose independent rect. 19 6
614 45.58 wind 9.0 90 < th dose independent rect. 9 20
616 45.58 radiation 40.0 270 < th dose dependent rect. 5 1
617 45.58 humidity 50.0 270 > th dose dependent rect. 4 3
623 45.59 wind 1.0 720 > th dose independent rect. 7 13
657 45.63 wind 7.0 90 < th dose independent rect. 23 6
658 45.63 radiation 20.0 90 < th dose independent rect. 5 8
663 45.63 atmosphere 1015.0 720 < th dose independent rect. 1 18
678 45.64 temperature 30.0 90 < th dose independent rect. 23 6
679 45.64 humidity 50.0 90 > th dose independent rect. 23 6
682 45.64 atmosphere 995.0 90 > th dose independent rect. 23 6
683 45.64 radiation 20.0 90 < th dose independent rect. 23 6
692 45.64 radiation 20.0 90 < th dose dependent rect. 23 6
695 45.65 humidity 60.0 720 > th dose independent sin 11 NA
701 45.65 radiation 1.0 90 < th dose independent rect. 23 6
720 45.65 humidity 50.0 270 > th dose dependent rect. 5 1
741 45.66 precipitation 0.1 90 < th dose independent rect. 23 6
748 45.66 humidity 50.0 720 > th dose independent rect. 19 22
749 45.66 temperature 20.0 90 > th dose dependent rect. 18 1
753 45.66 precipitation 0.1 90 < th dose dependent rect. 23 6
766 45.67 atmosphere 1015.0 90 < th dose independent rect. 5 18
795 45.69 atmosphere 995.0 90 > th dose independent rect. 9 20
810 45.70 atmosphere 1000.0 270 > th dose independent rect. 15 16
904 45.73 radiation 30.0 720 < th dose independent rect. 19 13
905 45.73 radiation 10.0 14400 < th dose dependent rect. 19 1
921 45.74 wind 9.0 270 < th dose independent rect. 6 23
952 45.76 precipitation 0.1 270 < th dose independent rect. 19 9
955 45.76 radiation 40.0 270 < th dose independent rect. 12 11
957 45.76 precipitation 0.1 720 < th dose independent rect. 19 13
958 45.76 atmosphere 995.0 270 > th dose independent rect. 7 21
962 45.76 precipitation 0.1 270 < th dose dependent rect. 19 9
969 45.76 precipitation 0.1 720 < th dose dependent rect. 19 13
970 45.77 temperature 10.0 1440 > th dose independent rect. 19 1
973 45.77 temperature 30.0 1440 < th dose independent rect. 19 1
977 45.77 humidity 50.0 1440 > th dose independent rect. 19 1
979 45.77 atmosphere 995.0 1440 > th dose independent rect. 19 1
983 45.77 radiation 1.0 1440 < th dose independent rect. 19 1